Factsheet for Bra008345.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra010354.1-P
Bra011055.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G78100.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G78100.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G78100.1	Bra014159.1-P	AT3G60010.1	12169662
AT1G78100.1	Bra018756.1-P	AT3G60010.1	12169662
AT1G78100.1	Bra018757.1-P	AT3G60010.1	12169662
AT1G78100.1	Bra010354.1-P	AT4G28720.1	21798944
AT1G78100.1	Bra011055.1-P	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26850	Canola	cytosol	87.07	92.62
CDY14629	Canola	cytosol	69.09	80.22
AT1G78100.1	Thale cress	cytosol	73.82	70.06
Bra015630.1-P	Field mustard	cytosol	70.35	69.47
Bra016384.1-P	Field mustard	cytosol	35.33	56.0
Bra031373.1-P	Field mustard	cytosol	57.1	55.86
Bra012314.1-P	Field mustard	cytosol	52.68	52.52
VIT_18s0001g05310.t01	Wine grape	cytosol	44.16	46.67
PGSC0003DMT400024512	Potato	cytosol	44.8	41.76
Solyc04g072930.1.1	Tomato	cytosol	44.48	41.47
Zm00001d006501_P001	Maize	cytosol	22.71	33.03
TraesCS3D01G329900.1	Wheat	cytosol	34.07	30.34
TraesCS3B01G368000.1	Wheat	cytosol	33.75	30.23
Os01t0812200-01	Rice	cytosol	33.12	29.75
GSMUA_Achr7P21580_001	Banana	cytosol	33.12	29.75
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	32.49	29.6
TraesCS1A01G307800.1	Wheat	cytosol	33.12	29.49
TraesCS1B01G318500.1	Wheat	cytosol	33.12	29.49
TraesCS1D01G307200.1	Wheat	cytosol	32.81	29.21
HORVU0Hr1G030450.1	Barley	cytosol	32.49	29.18
HORVU1Hr1G068570.1	Barley	cytosol	32.49	29.18
Zm00001d038537_P001	Maize	cytosol	32.49	29.1
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	32.81	28.97
EES19721	Sorghum	cytosol	32.18	28.81
EES01639	Sorghum	cytosol	32.18	28.81
TraesCS3D01G518800.1	Wheat	cytosol	28.71	28.71
Zm00001d043125_P001	Maize	cytosol	31.55	28.57
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	31.86	28.53
HORVU4Hr1G052070.1	Barley	cytosol	32.49	28.07
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	32.81	28.03
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	32.49	27.99
GSMUA_Achr10P...	Banana	cytosol	31.23	27.97
EER94941	Sorghum	cytosol, peroxisome, plastid	33.44	27.89
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	32.81	27.81
TraesCS4B01G177100.1	Wheat	cytosol	32.49	27.76
GSMUA_Achr3P18400_001	Banana	cytosol	31.55	27.55
Os03t0321300-01	Rice	cytosol	32.49	26.82
Bra013303.1-P	Field mustard	cytosol	31.86	26.79
Bra022022.1-P	Field mustard	cytosol	31.23	26.68
Bra025034.1-P	Field mustard	cytosol	31.23	26.47
GSMUA_Achr6P32090_001	Banana	cytosol	29.34	26.35
Zm00001d028957_P001	Maize	cytosol	28.39	25.86
Zm00001d047573_P001	Maize	plastid	33.44	24.37
Zm00001d043016_P001	Maize	plastid	19.56	24.31
Os05t0490300-01	Rice	mitochondrion	33.75	23.78
GSMUA_Achr6P15980_001	Banana	mitochondrion	31.55	13.4

Protein Annotations

EnsemblPlants:Bra008345.1	EnsemblPlants:Bra008345.1-P	EnsemblPlantsGene:Bra008345	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	PANTHER:PTHR31215	SUPFAM:SSF81383	UniParc:UPI00025464B9	UniProt:M4CVU8
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

AT1G78100 (E=6e-127) | F-box family protein

Coordinates

chrA02:+:14927965..14928918

Molecular Weight (calculated)

34885.8 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.235

Length

317 amino acids

Sequence
(BLAST)

001: MDAFDAIPDP VVIDILNKVR DVKTLIRCRS VSKRFNSLAT ESGSLLLQLD QIGESDSEKD STITSFFRSL FKSVNGLFPI FSKPAKPARI LTPVQILAGF
101: NRIRNLDVEF YGGDFKLEKG AAVKWKAEFG ESLKSCVIVA FRSATVNTSA IDGDAETDSE FVSGLKTRVV WTISALMAAS TRHYQMRDLV KEHKEMETLT
201: VRDRDGEGAV VMDAAGMKEY RETEARGDEK VSRERTVVPN VRMSMRNAPS LKLESGICLE AATLVVVRQS GVASDGDDAE LATGAFGDCM YGEAVAALLK
301: RRSRDGKRRT CPRARPV

Best Arabidopsis Sequence Match ( AT1G78100.1 )
(BLAST)

001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF

Arabidopsis Description

AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.