Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G78100.1 | EES11777 | AT4G28720.1 | 21798944 |
| AT1G78100.1 | EES15155 | AT4G28720.1 | 21798944 |
| AT1G78100.1 | KXG35000 | AT4G28720.1 | 21798944 |
| AT1G78100.1 | OQU88910 | AT4G28720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043125_P001 | Maize | cytosol | 92.66 | 93.71 |
| EES19721 | Sorghum | cytosol | 81.64 | 81.64 |
| Os01t0812200-01 | Rice | cytosol | 80.23 | 80.45 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 80.23 | 80.23 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 79.94 | 79.49 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 77.97 | 76.88 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 68.93 | 69.12 |
| GSMUA_Achr10P... | Banana | cytosol | 66.1 | 66.1 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 58.76 | 54.74 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 36.16 | 42.67 |
| Bra016384.1-P | Field mustard | cytosol | 22.88 | 40.5 |
| OQU78753 | Sorghum | cytosol | 40.68 | 38.81 |
| EES03683 | Sorghum | cytosol | 44.35 | 37.56 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 36.16 | 37.43 |
| EES01093 | Sorghum | cytosol | 43.79 | 37.08 |
| CDY46634 | Canola | cytosol | 29.1 | 37.05 |
| KXG22318 | Sorghum | cytosol | 44.35 | 36.94 |
| CDY21348 | Canola | cytosol | 32.77 | 35.8 |
| AT1G22220.1 | Thale cress | cytosol | 31.64 | 35.67 |
| Bra012314.1-P | Field mustard | cytosol | 31.64 | 35.22 |
| CDY38235 | Canola | cytosol | 32.2 | 35.19 |
| CDY00435 | Canola | cytosol | 31.36 | 34.91 |
| CDY41488 | Canola | cytosol | 31.36 | 34.8 |
| CDX91668 | Canola | cytosol | 31.36 | 34.8 |
| Solyc04g072930.1.1 | Tomato | cytosol | 33.33 | 34.71 |
| Bra031373.1-P | Field mustard | cytosol | 31.64 | 34.57 |
| CDY26850 | Canola | cytosol | 29.1 | 34.56 |
| PGSC0003DMT400024512 | Potato | cytosol | 33.05 | 34.41 |
| CDY14629 | Canola | cytosol | 25.71 | 33.33 |
| AT1G78100.1 | Thale cress | cytosol | 31.36 | 33.23 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 19.49 | 33.17 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 31.07 | 32.26 |
| Bra008345.1-P | Field mustard | cytosol | 28.81 | 32.18 |
| CDX88418 | Canola | cytosol | 28.81 | 31.78 |
| CDX87476 | Canola | cytosol | 28.53 | 31.46 |
| Bra015630.1-P | Field mustard | cytosol | 28.53 | 31.46 |
| PGSC0003DMT400097155 | Potato | cytosol | 29.1 | 29.43 |
| CDY32130 | Canola | cytosol | 21.47 | 28.04 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:8055280 | UniProt:C5XN51 | EnsemblPlants:EES01639 | ProteinID:EES01639 |
| ProteinID:EES01639.1 | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009719 |
| GO:GO:0009736 | GO:GO:0009914 | GO:GO:0009987 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF3 | EnsemblPlantsGene:SORBI_3003G331600 |
| SUPFAM:SSF81383 | unigene:Sbi.11472 | UniParc:UPI0001A8457C | RefSeq:XP_002456519.1 | : | : |
Description
hypothetical protein
Coordinates
chr3:+:65636768..65639087
Molecular Weight (calculated)
38601.5 Da
IEP (calculated)
7.928
GRAVY (calculated)
-0.113
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MHTKARIHAD PVLEFDQFDG LPDSLVLLIL NKLEDVRSLG RCSAVSKRFS GLVPLVHDVC VKIDHVVTVD GDSDDALNLS SPKPHNIISH LFKLMLFAIA
101: KPFHDMRSPS STGRPLFPQL SQHSPVQVLK NFSHVRNLQV ELPSGDVAVE EGVLLKWRAE YGSTLQNCVI LGGTLVDRKA AGNGHEPSSD DNGSMPESFY
201: TNGGLKLRVV WTISCLIAAS TRHYLLRSII NDHPTLRSLV LADAEGQGAL SMGAEQLKDF REHQLSASPC SNRTQVPACN MKLKYAQYLE LPGGLALQGA
301: TLLVIKPASD GSSSGHGNRK EVDAFVSGAF DGPLRFAAKA LMKRRTYLLE MNGF
101: KPFHDMRSPS STGRPLFPQL SQHSPVQVLK NFSHVRNLQV ELPSGDVAVE EGVLLKWRAE YGSTLQNCVI LGGTLVDRKA AGNGHEPSSD DNGSMPESFY
201: TNGGLKLRVV WTISCLIAAS TRHYLLRSII NDHPTLRSLV LADAEGQGAL SMGAEQLKDF REHQLSASPC SNRTQVPACN MKLKYAQYLE LPGGLALQGA
301: TLLVIKPASD GSSSGHGNRK EVDAFVSGAF DGPLRFAAKA LMKRRTYLLE MNGF
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.