CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000314_P001	Maize	cytosol	82.35	84.95
Zm00001d010705_P001	Maize	cytosol	80.24	82.77
Os05t0510400-02	Rice	cytosol	69.41	71.6
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	67.76	68.41
TraesCS1B01G342700.1	Wheat	cytosol	65.88	67.47
TraesCS1D01G331400.1	Wheat	cytosol	66.12	65.81
Solyc02g070480.2.1	Tomato	cytosol	28.71	63.54
OQU78753	Sorghum	cytosol	51.53	59.03
CDX87738	Canola	cytosol	51.76	58.98
KRH11156	Soybean	cytosol, nucleus, vacuole	53.41	58.96
KRH21091	Soybean	cytosol	53.41	58.66
GSMUA_Achr4P31500_001	Banana	cytosol	45.88	58.56
Bra022022.1-P	Field mustard	cytosol	50.82	58.22
CDY33458	Canola	cytosol	49.18	58.06
GSMUA_Achr7P07910_001	Banana	cytosol	52.24	57.96
GSMUA_Achr5P02540_001	Banana	cytosol	45.65	57.91
CDY43956	Canola	cytosol	50.59	57.64
GSMUA_Achr2P17340_001	Banana	cytosol	48.24	57.58
HORVU1Hr1G077600.2	Barley	plastid	65.88	57.49
CDX77641	Canola	cytosol	48.71	57.18
GSMUA_Achr4P22940_001	Banana	cytosol	50.12	57.1
EES03683	Sorghum	cytosol	56.0	56.94
AT5G46170.1	Thale cress	cytosol, plastid	52.71	56.71
Bra025034.1-P	Field mustard	cytosol	49.65	56.42
EES01093	Sorghum	cytosol	55.29	56.22
AT4G18380.1	Thale cress	cytosol	50.12	56.05
CDX78848	Canola	cytosol	12.71	55.67
CDX99890	Canola	cytosol, golgi, nucleus	48.0	55.59
VIT_10s0003g03880.t01	Wine grape	cytosol	52.0	55.39
Bra013303.1-P	Field mustard	cytosol	48.94	55.17
PGSC0003DMT400054525	Potato	cytosol	47.29	54.77
CDY26286	Canola	cytosol, nucleus, vacuole	48.0	54.55
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	48.0	54.55
AT1G30200.2	Thale cress	cytosol	48.24	54.09
PGSC0003DMT400049024	Potato	cytosol	48.94	53.47
Solyc08g048430.2.1	Tomato	cytosol	38.82	50.61
GSMUA_Achr11P...	Banana	extracellular	8.94	50.0
GSMUA_Achr7P01170_001	Banana	mitochondrion	44.94	46.7
EES19721	Sorghum	cytosol	38.35	46.05
EER94941	Sorghum	cytosol, peroxisome, plastid	40.24	45.0
EES01639	Sorghum	cytosol	36.94	44.35
CDX99469	Canola	nucleus	19.53	36.56
CDX78847	Canola	cytosol	18.59	33.19
PGSC0003DMT400002031	Potato	extracellular	11.06	29.38
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	8.94	23.75

Protein Annotations

EnsemblPlants:KXG22318	EnsemblPlantsGene:SORBI_3009G192500	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	PFAM:PF12937
PFscan:PS50181	ProteinID:KXG22318	ProteinID:KXG22318.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI00081AE66E
UniProt:A0A1B6P9F2	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:54429419..54432900

Molecular Weight (calculated)

45059.1 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.092

Length

425 amino acids

Sequence
(BLAST)

001: MSEDPAGSRR WRCDLGGDER WLSGAAGDDH FDRLPDALLL VIFNRIGDVK ALGRCSLVSR RFHELVPLVD SVVVRVDCVI PDEPPSSSSS PSAPSSPTAS
101: VRARGVFSQI ARIVLGGIVK PIQALGQILS PANSASGFPA SSTSSPSSSS SASPLPAGDV SHHSPSEVLR SFKELRHLRI ELPAGELGMD DGVMLKWKAD
201: FGSTLGSCVI LGASSASTST STSTSTSTST LPSPSPSAGS EGASSAPSVD DAGRTEPDDC DDSGSIPESF YTNGGFKLRV VWTISSLIAA AARHYLLQPI
301: IADHRMLESL DLTDADGQGV LTMDKCQLQE LRVIPISTSR GSHRTLMPEL SMWLWYAPCI ELPGGLVLNG ATLVAIKPSE EGTGDTVWNG ADGAAWVLDA
401: FEEPYRTAVR MLLKRRTYSL EMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.