CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26286	Canola	cytosol, nucleus, vacuole	91.28	89.57
CDX78848	Canola	cytosol	22.07	83.51
AT1G30200.2	Thale cress	cytosol	84.2	81.53
Solyc02g070480.2.1	Tomato	cytosol	40.05	76.56
CDY33458	Canola	cytosol	71.12	72.5
CDX87738	Canola	cytosol	72.75	71.58
CDY43956	Canola	cytosol	72.21	71.05
CDX77641	Canola	cytosol	70.03	70.99
KRH11156	Soybean	cytosol, nucleus, vacuole	70.57	67.27
KRH21091	Soybean	cytosol	70.84	67.18
VIT_10s0003g03880.t01	Wine grape	cytosol	73.02	67.17
PGSC0003DMT400054525	Potato	cytosol	66.48	66.48
PGSC0003DMT400049024	Potato	cytosol	67.85	64.01
Solyc08g048430.2.1	Tomato	cytosol	53.41	60.12
GSMUA_Achr4P22940_001	Banana	cytosol	56.13	55.23
GSMUA_Achr2P17340_001	Banana	cytosol	53.41	55.06
GSMUA_Achr4P31500_001	Banana	cytosol	49.86	54.95
GSMUA_Achr5P02540_001	Banana	cytosol	49.86	54.63
Os01t0770400-01	Rice	cytosol	57.49	53.28
GSMUA_Achr7P07910_001	Banana	cytosol	55.59	53.26
GSMUA_Achr11P...	Banana	extracellular	10.63	51.32
Zm00001d010705_P001	Maize	cytosol	57.49	51.21
Zm00001d000314_P001	Maize	cytosol	56.95	50.73
Os05t0510400-02	Rice	cytosol	56.68	50.49
TraesCS3A01G296700.1	Wheat	cytosol	55.04	50.37
TraesCS3D01G306000.1	Wheat	cytosol	54.5	49.88
TraesCS3B01G340400.1	Wheat	cytosol	54.5	49.75
TraesCS1B01G342700.1	Wheat	cytosol	55.59	49.16
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	55.86	48.69
TraesCS1D01G331400.1	Wheat	cytosol	55.86	48.01
KXG22318	Sorghum	cytosol	55.59	48.0
OQU78753	Sorghum	cytosol	48.5	47.98
Zm00001d043324_P001	Maize	cytosol	51.77	47.38
Zm00001d012644_P001	Maize	cytosol	52.04	46.59
EES03683	Sorghum	cytosol	52.04	45.69
GSMUA_Achr7P01170_001	Banana	mitochondrion	49.86	44.74
EES01093	Sorghum	cytosol	50.95	44.74
CDX99469	Canola	nucleus	26.7	43.17
HORVU1Hr1G077600.2	Barley	plastid	56.4	42.51
GSMUA_Achr10P...	Banana	cytosol	32.43	41.32
HORVU3Hr1G075050.2	Barley	plastid	53.68	41.13
CDX78847	Canola	cytosol	23.98	36.97
CDY26850	Canola	cytosol	28.61	35.23
CDY41488	Canola	cytosol	30.52	35.11
CDX91668	Canola	cytosol	29.7	34.17
CDY14629	Canola	cytosol	25.34	34.07
CDY00435	Canola	cytosol	29.43	33.96
CDX87476	Canola	cytosol	29.7	33.96
CDX88418	Canola	cytosol	29.7	33.96
CDY46634	Canola	cytosol	25.61	33.81
CDY38235	Canola	cytosol	29.16	33.02
CDY21348	Canola	cytosol	29.16	33.02
CDY32130	Canola	cytosol	19.62	26.57
Zm00001d006500_P001	Maize	cytosol	26.98	24.44

Protein Annotations

EnsemblPlants:CDX99890	EnsemblPlantsGene:GSBRNA2T00108682001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	PFAM:PF12937
ProteinID:CDX99890	ProteinID:CDX99890.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EBE99B	MapMan:19.2.2.8.1.4.6

Description

BnaC05g23120D

Coordinates

chrLK031914:+:1242061..1243859

Molecular Weight (calculated)

40753.7 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.062

Length

367 amino acids

Sequence
(BLAST)

001: MSYLLRSEPV SRIHPEPQPL DDIDHFDHLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDD RRFSLNTASI SDASAGGSFS
101: ALFRLVFAPI FKPFQALGQF LGPRRSLSSL EDETDQSGVT HHSPTQVLKN FAEIRFLRIE LPTGELGIED GILLKWRADF GSTLDNCMIL GASSVTRSSS
201: DLESPLLDDD NGNIPESFYT NGGLKLRVVW TISSLIAASA RHYLLQPIIT EHKTLDRLVL SDADGQGVLS MNREQLEELR VTPLSASSAS KRTLVPALNM
301: RLWYAPQLDL PDGTVLTGAT LVAIRPSESK KEVCDASWLA DAFEEPFGTA ARMLIKRRTY CLEMNSF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.