Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43956 | Canola | cytosol | 93.03 | 93.03 |
| CDX78848 | Canola | cytosol | 23.06 | 88.66 |
| CDX77641 | Canola | cytosol | 80.16 | 82.6 |
| CDY33458 | Canola | cytosol | 79.09 | 81.94 |
| AT5G46170.1 | Thale cress | cytosol, plastid | 82.57 | 77.97 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 71.58 | 72.75 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 75.6 | 70.68 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 70.51 | 70.32 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 71.05 | 68.83 |
| KRH21091 | Soybean | cytosol | 71.05 | 68.48 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 51.74 | 57.61 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 51.21 | 57.36 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 54.16 | 56.74 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 58.18 | 56.66 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 56.3 | 56.3 |
| Os05t0510400-02 | Rice | cytosol | 61.39 | 55.58 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 58.98 | 54.86 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 58.45 | 54.23 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 58.18 | 54.11 |
| GSMUA_Achr11P... | Banana | extracellular | 10.99 | 53.95 |
| Os01t0770400-01 | Rice | cytosol | 57.1 | 53.79 |
| Zm00001d000314_P001 | Maize | cytosol | 58.71 | 53.16 |
| Zm00001d043324_P001 | Maize | cytosol | 56.84 | 52.87 |
| Zm00001d010705_P001 | Maize | cytosol | 58.18 | 52.67 |
| OQU78753 | Sorghum | cytosol | 52.01 | 52.29 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 58.18 | 52.29 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 58.71 | 52.02 |
| Zm00001d012644_P001 | Maize | cytosol | 57.1 | 51.95 |
| KXG22318 | Sorghum | cytosol | 58.98 | 51.76 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 59.25 | 51.76 |
| EES03683 | Sorghum | cytosol | 56.84 | 50.72 |
| EES01093 | Sorghum | cytosol | 55.5 | 49.52 |
| CDX99469 | Canola | nucleus | 29.49 | 48.46 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 50.13 | 45.72 |
| HORVU3Hr1G075050.2 | Barley | plastid | 57.1 | 44.47 |
| HORVU1Hr1G077600.2 | Barley | plastid | 57.91 | 44.35 |
| GSMUA_Achr10P... | Banana | cytosol | 32.71 | 42.36 |
| CDX78847 | Canola | cytosol | 25.74 | 40.34 |
| CDY00435 | Canola | cytosol | 30.03 | 35.22 |
| CDY21348 | Canola | cytosol | 30.03 | 34.57 |
| CDY46634 | Canola | cytosol | 25.47 | 34.17 |
| CDY41488 | Canola | cytosol | 29.22 | 34.17 |
| CDY26850 | Canola | cytosol | 27.08 | 33.89 |
| CDX91668 | Canola | cytosol | 28.95 | 33.86 |
| CDY38235 | Canola | cytosol | 28.95 | 33.33 |
| CDY14629 | Canola | cytosol | 24.4 | 33.33 |
| CDX87476 | Canola | cytosol | 27.88 | 32.4 |
| CDX88418 | Canola | cytosol | 27.88 | 32.4 |
| Zm00001d006500_P001 | Maize | cytosol | 28.15 | 25.93 |
| CDY32130 | Canola | cytosol | 18.23 | 25.09 |
Protein Annotations
| EnsemblPlants:CDX87738 | EnsemblPlantsGene:GSBRNA2T00146787001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 | PFAM:PF12937 |
| ProteinID:CDX87738 | ProteinID:CDX87738.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0004EC76AB | MapMan:19.2.2.8.1.4.6 |
Description
BnaC02g32110D
Coordinates
chrLK031851:+:742930..744051
Molecular Weight (calculated)
40575.6 Da
IEP (calculated)
5.885
GRAVY (calculated)
-0.061
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVIPGSDPT SRIHPEPQPL EQIDHFDRLP DSILLLVLNR IADVKSLGRC CAVSRRFHSL VPQVENVVVR VDCVISDDDN SSLSSVKPPS AASSSFSAVF
101: SLVVGGIVKP LQALGQLLGT NRSSSASSLS MNGEIEQGGV KHHSPTQVLR NFDEIRYLRI ELPSGELGID EGVLLKWRAE FGSTLDNCVI LGASSVIQPS
201: PMEISHTLEA PDASEDNGSI PESFYTNGGL KLRVVWTISS LIAASARHYL LQPIISEHKT LKSLVLTDSD GQGVLCMNKD QLEELRVKPL SASSASKRTL
301: VPALNMRLWY APSLELPDGT VLKGATLVAI RPSESKKDVS DANWVSSVFE EPYETAAKML VKRRTYCLEM NSF
101: SLVVGGIVKP LQALGQLLGT NRSSSASSLS MNGEIEQGGV KHHSPTQVLR NFDEIRYLRI ELPSGELGID EGVLLKWRAE FGSTLDNCVI LGASSVIQPS
201: PMEISHTLEA PDASEDNGSI PESFYTNGGL KLRVVWTISS LIAASARHYL LQPIISEHKT LKSLVLTDSD GQGVLCMNKD QLEELRVKPL SASSASKRTL
301: VPALNMRLWY APSLELPDGT VLKGATLVAI RPSESKKDVS DANWVSSVFE EPYETAAKML VKRRTYCLEM NSF
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.