Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33458 | Canola | cytosol | 79.49 | 87.22 |
| CDX77641 | Canola | cytosol | 78.99 | 86.19 |
| Bra025034.1-P | Field mustard | cytosol | 80.76 | 85.29 |
| CDX87738 | Canola | cytosol | 77.97 | 82.57 |
| Bra022022.1-P | Field mustard | cytosol | 77.47 | 82.48 |
| CDY43956 | Canola | cytosol | 76.71 | 81.23 |
| AT4G18380.1 | Thale cress | cytosol | 77.72 | 80.79 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 76.71 | 75.94 |
| KRH21091 | Soybean | cytosol | 72.15 | 73.64 |
| AT1G30200.2 | Thale cress | cytosol | 69.62 | 72.56 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 70.63 | 72.47 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 57.72 | 59.53 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 49.87 | 59.16 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 52.91 | 58.71 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 55.19 | 58.45 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 48.86 | 57.61 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 56.96 | 56.11 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 56.71 | 55.72 |
| Os05t0510400-02 | Rice | cytosol | 57.97 | 55.58 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 56.2 | 55.36 |
| Os01t0770400-01 | Rice | cytosol | 55.44 | 55.3 |
| GSMUA_Achr11P... | Banana | extracellular | 10.63 | 55.26 |
| Zm00001d000314_P001 | Maize | cytosol | 56.71 | 54.37 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 56.96 | 54.22 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 57.72 | 54.16 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 57.47 | 53.16 |
| Zm00001d010705_P001 | Maize | cytosol | 55.44 | 53.16 |
| KXG22318 | Sorghum | cytosol | 56.71 | 52.71 |
| OQU78753 | Sorghum | cytosol | 49.11 | 52.29 |
| Zm00001d043324_P001 | Maize | cytosol | 52.91 | 52.12 |
| Zm00001d012644_P001 | Maize | cytosol | 53.92 | 51.95 |
| EES03683 | Sorghum | cytosol | 52.91 | 50.0 |
| EES01093 | Sorghum | cytosol | 52.41 | 49.52 |
| HORVU3Hr1G075050.2 | Barley | plastid | 56.96 | 46.97 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 48.61 | 46.94 |
| HORVU1Hr1G077600.2 | Barley | plastid | 57.72 | 46.82 |
| GSMUA_Achr10P... | Banana | cytosol | 31.65 | 43.4 |
| AT1G22220.1 | Thale cress | cytosol | 29.37 | 36.94 |
| AT1G78100.1 | Thale cress | cytosol | 27.85 | 32.93 |
| Zm00001d006500_P001 | Maize | cytosol | 26.84 | 26.17 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:834659 | UniProt:A0A178U887 | ProteinID:AED95349.1 | ArrayExpress:AT5G46170 |
| EnsemblPlantsGene:AT5G46170 | RefSeq:AT5G46170 | TAIR:AT5G46170 | RefSeq:AT5G46170-TAIR-G | EnsemblPlants:AT5G46170.1 | TAIR:AT5G46170.1 |
| EMBL:AY070105 | EMBL:AY142657 | Unigene:At.7273 | ProteinID:BAB08262.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009736 | GO:GO:0009914 | GO:GO:0009987 | GO:GO:0010286 | InterPro:IPR001810 | RefSeq:NP_199429.1 |
| ProteinID:OAO89860.1 | PFAM:PF12937 | PO:PO:0000293 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 | UniProt:Q9FNK5 |
| SUPFAM:SSF81383 | UniParc:UPI00000AC4D3 | SEG:seg | : | : | : |
Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
Coordinates
chr5:-:18714864..18717031
Molecular Weight (calculated)
42497.7 Da
IEP (calculated)
5.652
GRAVY (calculated)
-0.051
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.