Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78848 | Canola | cytosol | 25.0 | 97.94 |
| Bra013303.1-P | Field mustard | cytosol | 80.0 | 80.64 |
| AT5G46170.1 | Thale cress | cytosol, plastid | 80.79 | 77.72 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 73.95 | 70.43 |
| AT1G30200.2 | Thale cress | cytosol | 70.0 | 70.18 |
| KRH21091 | Soybean | cytosol | 69.74 | 68.48 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 69.21 | 68.31 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 49.74 | 56.76 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 57.11 | 56.66 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 52.89 | 56.46 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 48.68 | 55.22 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 53.95 | 54.96 |
| Os01t0770400-01 | Rice | cytosol | 56.05 | 53.79 |
| Os05t0510400-02 | Rice | cytosol | 57.63 | 53.16 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 56.05 | 53.12 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 56.05 | 53.12 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 56.05 | 52.99 |
| GSMUA_Achr11P... | Banana | extracellular | 10.53 | 52.63 |
| Zm00001d000314_P001 | Maize | cytosol | 56.58 | 52.18 |
| OQU78753 | Sorghum | cytosol | 50.53 | 51.75 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 55.79 | 51.08 |
| Zm00001d010705_P001 | Maize | cytosol | 55.26 | 50.97 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 56.32 | 50.83 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 56.58 | 50.35 |
| Zm00001d012644_P001 | Maize | cytosol | 54.21 | 50.24 |
| Zm00001d043324_P001 | Maize | cytosol | 52.89 | 50.12 |
| KXG22318 | Sorghum | cytosol | 56.05 | 50.12 |
| EES03683 | Sorghum | cytosol | 54.74 | 49.76 |
| EES01093 | Sorghum | cytosol | 53.68 | 48.8 |
| HORVU1Hr1G077600.2 | Barley | plastid | 57.11 | 44.56 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 47.89 | 44.5 |
| HORVU3Hr1G075050.2 | Barley | plastid | 55.79 | 44.26 |
| GSMUA_Achr10P... | Banana | cytosol | 31.05 | 40.97 |
| AT1G22220.1 | Thale cress | cytosol | 31.32 | 37.9 |
| PGSC0003DMT400002031 | Potato | extracellular | 15.0 | 35.62 |
| AT1G78100.1 | Thale cress | cytosol | 30.53 | 34.73 |
| PGSC0003DMT400054900 | Potato | extracellular, plasma membrane | 13.42 | 31.88 |
| Zm00001d006500_P001 | Maize | cytosol | 26.84 | 25.19 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:827567 | ProteinID:AEE84037.1 | ProteinID:AEE84038.1 | ArrayExpress:AT4G18380 |
| EnsemblPlantsGene:AT4G18380 | RefSeq:AT4G18380 | TAIR:AT4G18380 | RefSeq:AT4G18380-TAIR-G | EnsemblPlants:AT4G18380.1 | TAIR:AT4G18380.1 |
| Unigene:At.32912 | EMBL:BT029547 | ProteinID:CAA16718.1 | ProteinID:CAB78840.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009719 | GO:GO:0009736 | GO:GO:0009914 |
| GO:GO:0009987 | InterPro:IPR001810 | RefSeq:NP_001190761.1 | RefSeq:NP_193573.1 | UniProt:O49508 | PFAM:PF12937 |
| PO:PO:0000293 | PFscan:PS50181 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 | SUPFAM:SSF81383 | UniParc:UPI00000A4695 |
| SEG:seg | : | : | : | : | : |
Description
F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
Coordinates
chr4:+:10157807..10159748
Molecular Weight (calculated)
41163.3 Da
IEP (calculated)
5.448
GRAVY (calculated)
0.011
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.