Factsheet for TraesCS1D01G331400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G342700.1	Wheat	cytosol	84.07	86.51
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	84.07	85.27
Os05t0510400-02	Rice	cytosol	70.49	73.06
HORVU1Hr1G077600.2	Barley	plastid	78.92	69.2
Zm00001d000314_P001	Maize	cytosol	66.04	68.45
Zm00001d010705_P001	Maize	cytosol	65.34	67.72
KXG22318	Sorghum	cytosol	65.81	66.12
TraesCS3D01G306000.1	Wheat	cytosol	61.12	65.09
Solyc02g070480.2.1	Tomato	cytosol	28.57	63.54
GSMUA_Achr2P17340_001	Banana	cytosol	50.82	60.96
CDY33458	Canola	cytosol	51.05	60.56
GSMUA_Achr7P07910_001	Banana	cytosol	54.1	60.31
CDX78848	Canola	cytosol	13.58	59.79
KRH11156	Soybean	cytosol, nucleus, vacuole	53.86	59.74
GSMUA_Achr4P22940_001	Banana	cytosol	51.99	59.52
CDX77641	Canola	cytosol	50.35	59.39
CDX87738	Canola	cytosol	51.76	59.25
KRH21091	Soybean	cytosol	53.63	59.17
GSMUA_Achr5P02540_001	Banana	cytosol	46.37	59.1
Bra025034.1-P	Field mustard	cytosol	51.76	59.09
Bra022022.1-P	Field mustard	cytosol	51.29	59.03
GSMUA_Achr4P31500_001	Banana	cytosol	45.9	58.86
CDY43956	Canola	cytosol	51.05	58.45
VIT_10s0003g03880.t01	Wine grape	cytosol	54.1	57.89
AT5G46170.1	Thale cress	cytosol, plastid	53.16	57.47
Bra013303.1-P	Field mustard	cytosol	50.12	56.76
AT4G18380.1	Thale cress	cytosol	50.35	56.58
PGSC0003DMT400054525	Potato	cytosol	48.01	55.86
CDX99890	Canola	cytosol, golgi, nucleus	48.01	55.86
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	48.01	54.81
CDY26286	Canola	cytosol, nucleus, vacuole	48.01	54.81
AT1G30200.2	Thale cress	cytosol	48.48	54.62
GSMUA_Achr11P...	Banana	extracellular	9.6	53.95
PGSC0003DMT400049024	Potato	cytosol	48.48	53.21
Solyc08g048430.2.1	Tomato	cytosol	39.34	51.53
TraesCS3D01G329900.1	Wheat	cytosol	40.98	49.16
GSMUA_Achr7P01170_001	Banana	mitochondrion	46.14	48.17
TraesCS1D01G307200.1	Wheat	cytosol	39.11	46.91
TraesCS3D01G518800.1	Wheat	cytosol	33.72	45.43
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	38.41	44.57
CDX99469	Canola	nucleus	19.67	37.0
CDX78847	Canola	cytosol	18.5	33.19
PGSC0003DMT400002031	Potato	extracellular	10.77	28.75
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	9.37	25.0

Protein Annotations

EnsemblPlants:TraesCS1D01G331400.1	EnsemblPlantsGene:TraesCS1D01G331400	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	PFAM:PF12937
SEG:seg	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:	:

Description

No Description!

Coordinates

chr1D:+:422289880..422291163

Molecular Weight (calculated)

44570.8 Da

IEP (calculated)

6.053

GRAVY (calculated)

0.023

Length

427 amino acids

Sequence
(BLAST)

001: MAADAAAAAA GPRRWRCEEE ERQPHRLSAA AAADDRFDGL PDPLLLLIFN RIGDVKALGR CALVSRRFHA LVPLVDSVLV RVDCVIPDDP ASSASGSPSS
101: SAPSSPTASA SARARGVFSQ IARMLIGGIV KPIQALGQIL SHAGSASDFP ASASLSSFRR SAASSLSSSA SAPPGDVSHH SPSEVLRSFK ELRSLRIELP
201: AGELGMDDGV LLKWKADFGS TLGSCVILGA ASASASPSSA AKDGATAAPP PATADCAESD DSGSIPESFY TNGGLKLRVL WTISSLIAAS ARHYLLQPII
301: SDHALLESLD LTDADGQGVL TMDKWQLQEL RVRPVSASGD SHRTLMPALS MRLWYAPHIE LPGGTVLNGA TLVAIKPSEE AMMDAVGNAT AGSAGGSWVS
401: DAFEEPYRTA VGVLLKRRMY SLEMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.