Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78848 | Canola | cytosol | 24.03 | 89.69 |
| CDY33458 | Canola | cytosol | 88.67 | 89.17 |
| CDX87738 | Canola | cytosol | 82.6 | 80.16 |
| AT5G46170.1 | Thale cress | cytosol, plastid | 86.19 | 78.99 |
| CDY43956 | Canola | cytosol | 81.22 | 78.82 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 70.99 | 70.03 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 77.07 | 69.92 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 70.99 | 68.72 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 72.65 | 68.31 |
| KRH21091 | Soybean | cytosol | 72.38 | 67.7 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 56.35 | 57.3 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 60.22 | 56.92 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 58.29 | 56.57 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 51.93 | 56.46 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 52.21 | 56.42 |
| Os05t0510400-02 | Rice | cytosol | 61.05 | 53.64 |
| GSMUA_Achr11P... | Banana | extracellular | 10.77 | 51.32 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 56.63 | 51.12 |
| Os01t0770400-01 | Rice | cytosol | 55.8 | 51.01 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 58.29 | 50.84 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 56.35 | 50.75 |
| Zm00001d000314_P001 | Maize | cytosol | 57.73 | 50.73 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 58.84 | 50.59 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 55.8 | 50.37 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 59.39 | 50.35 |
| Zm00001d010705_P001 | Maize | cytosol | 57.18 | 50.24 |
| Zm00001d043324_P001 | Maize | cytosol | 54.14 | 48.88 |
| KXG22318 | Sorghum | cytosol | 57.18 | 48.71 |
| OQU78753 | Sorghum | cytosol | 49.17 | 47.98 |
| Zm00001d012644_P001 | Maize | cytosol | 53.87 | 47.56 |
| EES03683 | Sorghum | cytosol | 53.31 | 46.17 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 51.66 | 45.72 |
| EES01093 | Sorghum | cytosol | 52.76 | 45.69 |
| CDX99469 | Canola | nucleus | 28.18 | 44.93 |
| HORVU1Hr1G077600.2 | Barley | plastid | 58.01 | 43.12 |
| HORVU3Hr1G075050.2 | Barley | plastid | 56.35 | 42.59 |
| GSMUA_Achr10P... | Banana | cytosol | 32.6 | 40.97 |
| CDX78847 | Canola | cytosol | 25.69 | 39.08 |
| CDY26850 | Canola | cytosol | 29.01 | 35.23 |
| CDY00435 | Canola | cytosol | 30.11 | 34.28 |
| CDY46634 | Canola | cytosol | 25.97 | 33.81 |
| CDY14629 | Canola | cytosol | 25.41 | 33.7 |
| CDY21348 | Canola | cytosol | 30.11 | 33.64 |
| CDY41488 | Canola | cytosol | 29.28 | 33.23 |
| CDX91668 | Canola | cytosol | 29.01 | 32.92 |
| CDY38235 | Canola | cytosol | 29.28 | 32.72 |
| CDX87476 | Canola | cytosol | 29.01 | 32.71 |
| CDX88418 | Canola | cytosol | 28.73 | 32.4 |
| CDY32130 | Canola | cytosol | 18.51 | 24.72 |
| Zm00001d006500_P001 | Maize | cytosol | 27.35 | 24.44 |
Protein Annotations
| EnsemblPlants:CDX77641 | EnsemblPlantsGene:GSBRNA2T00128579001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 | PFAM:PF12937 |
| ProteinID:CDX77641 | ProteinID:CDX77641.1 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EF2B1C |
| MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
BnaC07g18950D
Coordinates
chrLK031812:-:350199..351926
Molecular Weight (calculated)
39560.5 Da
IEP (calculated)
6.424
GRAVY (calculated)
-0.043
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVIPRSDPP SRIHPEPQTL GIDHFDHLPD SILLLVFNKI SDVKSLGRCC VVSRRFHSLV TQVENVLIRV DCVISDDDNS SLSSIKSRSS ASGPFSSIFR
101: LVVGGIVKPL QAGDEGGEIE QGGVTHHSPT QVLKNFEEIR YLRIELPSGE LGIDEGVLLK WRAEFGSTLD HCVILGASSV IQPNPMRVSQ AIVTTTVESP
201: ASDDNGSIPE SFYTNGGLKL RVVWTISSLI AASARHYLLQ PIIAEHKTLR SLVLSDSDGQ GVLCMNRDQL EELRVKPLSA SSASKRTLVP ALNMRLWYAP
301: TLELPDGTVL KGATLVAIRP SESKKEASDV SWVSSAAFEE PYEAAVKMLV KRKTYCLEMN SF
101: LVVGGIVKPL QAGDEGGEIE QGGVTHHSPT QVLKNFEEIR YLRIELPSGE LGIDEGVLLK WRAEFGSTLD HCVILGASSV IQPNPMRVSQ AIVTTTVESP
201: ASDDNGSIPE SFYTNGGLKL RVVWTISSLI AASARHYLLQ PIIAEHKTLR SLVLSDSDGQ GVLCMNRDQL EELRVKPLSA SSASKRTLVP ALNMRLWYAP
301: TLELPDGTVL KGATLVAIRP SESKKEASDV SWVSSAAFEE PYEAAVKMLV KRKTYCLEMN SF
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.