Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78847 | Canola | cytosol | 52.86 | 50.42 |
| CDX87738 | Canola | cytosol | 48.46 | 29.49 |
| CDY43956 | Canola | cytosol | 47.14 | 28.69 |
| CDX77641 | Canola | cytosol | 44.93 | 28.18 |
| CDY33458 | Canola | cytosol | 43.61 | 27.5 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 43.17 | 26.7 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 41.85 | 25.4 |
| GSMUA_Achr11P... | Banana | extracellular | 8.37 | 25.0 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 35.24 | 24.02 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 39.21 | 23.24 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 33.92 | 22.99 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 37.44 | 22.79 |
| GSMUA_Achr10P... | Banana | cytosol | 28.63 | 22.57 |
| Os01t0770400-01 | Rice | cytosol | 38.77 | 22.22 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 34.36 | 21.91 |
| Os05t0510400-02 | Rice | cytosol | 38.77 | 21.36 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 37.44 | 21.2 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 37.44 | 21.14 |
| Zm00001d043324_P001 | Maize | cytosol | 37.0 | 20.95 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 37.0 | 20.95 |
| Zm00001d000314_P001 | Maize | cytosol | 37.44 | 20.63 |
| CDX78848 | Canola | cytosol | 8.81 | 20.62 |
| Zm00001d012644_P001 | Maize | cytosol | 37.0 | 20.49 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 37.89 | 20.43 |
| Zm00001d010705_P001 | Maize | cytosol | 36.12 | 19.9 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 37.0 | 19.67 |
| EES03683 | Sorghum | cytosol | 36.12 | 19.62 |
| EES01093 | Sorghum | cytosol | 36.12 | 19.62 |
| KXG22318 | Sorghum | cytosol | 36.56 | 19.53 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 35.68 | 19.52 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 34.36 | 19.07 |
| OQU78753 | Sorghum | cytosol | 30.84 | 18.87 |
| HORVU1Hr1G077600.2 | Barley | plastid | 38.77 | 18.07 |
| CDY46634 | Canola | cytosol | 21.15 | 17.27 |
| HORVU3Hr1G075050.2 | Barley | plastid | 36.12 | 17.12 |
| Zm00001d006500_P001 | Maize | cytosol | 30.4 | 17.04 |
| CDY00435 | Canola | cytosol | 23.35 | 16.67 |
| CDY21348 | Canola | cytosol | 23.79 | 16.67 |
| CDX91668 | Canola | cytosol | 23.35 | 16.61 |
| CDY38235 | Canola | cytosol | 23.35 | 16.36 |
| CDY41488 | Canola | cytosol | 22.91 | 16.3 |
| CDY26850 | Canola | cytosol | 19.82 | 15.1 |
| CDX87476 | Canola | cytosol | 20.7 | 14.64 |
| CDX88418 | Canola | cytosol | 20.7 | 14.64 |
| CDY14629 | Canola | cytosol | 15.42 | 12.82 |
| CDY32130 | Canola | cytosol | 14.54 | 12.18 |
Protein Annotations
| EnsemblPlants:CDX99469 | EnsemblPlantsGene:GSBRNA2T00107817001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 | PFAM:PF12937 |
| ProteinID:CDX99469 | ProteinID:CDX99469.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0004EF0079 | MapMan:19.2.2.8.1.4.6 |
Description
BnaC01g10830D
Coordinates
chrLK031910:-:979928..981061
Molecular Weight (calculated)
25928.3 Da
IEP (calculated)
12.029
GRAVY (calculated)
-0.679
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVIHRSDPL SRIHPEPLHQ PDFFDHLPDS ILLLVFNRIG DVKALGRCGV VSKRFHSLVP QVENVVVRVD CVISDDDDPS SLSPDKPRSS ASPFSAIFRL
101: IFKPLHALTQ LLATKRSSSS PRRDSPLPDA GPQKLQRDSF PPHRASRRRV RHRRRRFAEM ACGVRINPRE LRHPRRLLRG HRPSSFRRQQ RGGGGGGQRE
201: HTGVVLHERR AQASCRRRTY CLEMNSF
101: IFKPLHALTQ LLATKRSSSS PRRDSPLPDA GPQKLQRDSF PPHRASRRRV RHRRRRFAEM ACGVRINPRE LRHPRRLLRG HRPSSFRRQQ RGGGGGGQRE
201: HTGVVLHERR AQASCRRRTY CLEMNSF
001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
Arabidopsis Description
F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.