Factsheet for Zm00001d012644_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043324_P001	Maize	cytosol	82.68	84.54
EES03683	Sorghum	cytosol	85.61	83.97
OQU78753	Sorghum	cytosol	75.61	83.56
EES01093	Sorghum	cytosol	84.88	83.25
Os01t0770400-01	Rice	cytosol	72.2	74.75
TraesCS3A01G296700.1	Wheat	cytosol	69.02	70.57
TraesCS3D01G306000.1	Wheat	cytosol	68.54	70.07
TraesCS3B01G340400.1	Wheat	cytosol	68.05	69.4
Solyc02g070480.2.1	Tomato	cytosol	29.51	63.02
CDX78848	Canola	cytosol	14.39	60.82
Zm00001d010705_P001	Maize	cytosol	60.73	60.44
Zm00001d000314_P001	Maize	cytosol	60.24	59.95
GSMUA_Achr4P31500_001	Banana	cytosol	48.54	59.76
GSMUA_Achr5P02540_001	Banana	cytosol	48.29	59.1
GSMUA_Achr4P22940_001	Banana	cytosol	53.41	58.71
GSMUA_Achr2P17340_001	Banana	cytosol	50.73	58.43
GSMUA_Achr7P07910_001	Banana	cytosol	54.15	57.96
Bra022022.1-P	Field mustard	cytosol	52.2	57.68
CDY43956	Canola	cytosol	52.2	57.37
CDX87738	Canola	cytosol	51.95	57.1
HORVU3Hr1G075050.2	Barley	plastid	66.59	56.99
CDY33458	Canola	cytosol	48.29	55.0
KRH11156	Soybean	cytosol, nucleus, vacuole	51.46	54.81
KRH21091	Soybean	cytosol	51.71	54.78
AT4G18380.1	Thale cress	cytosol	50.24	54.21
VIT_10s0003g03880.t01	Wine grape	cytosol	52.68	54.14
AT5G46170.1	Thale cress	cytosol, plastid	51.95	53.92
CDX77641	Canola	cytosol	47.56	53.87
Bra013303.1-P	Field mustard	cytosol	49.51	53.85
PGSC0003DMT400054525	Potato	cytosol	48.05	53.68
CDY26286	Canola	cytosol, nucleus, vacuole	48.29	52.94
Bra025034.1-P	Field mustard	cytosol	48.29	52.94
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	48.29	52.94
GSMUA_Achr11P...	Banana	extracellular	9.76	52.63
AT1G30200.2	Thale cress	cytosol	48.54	52.51
CDX99890	Canola	cytosol, golgi, nucleus	46.59	52.04
Zm00001d006501_P001	Maize	cytosol	27.32	51.38
PGSC0003DMT400049024	Potato	cytosol	48.05	50.64
GSMUA_Achr7P01170_001	Banana	mitochondrion	47.8	47.92
Solyc08g048430.2.1	Tomato	cytosol	37.8	47.55
Zm00001d038537_P001	Maize	cytosol	39.27	45.48
Zm00001d043125_P001	Maize	cytosol	38.05	44.57
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	38.05	44.07
Zm00001d043016_P001	Maize	plastid	26.83	43.14
Zm00001d028957_P001	Maize	cytosol	34.63	40.8
Zm00001d047573_P001	Maize	plastid	40.73	38.39
CDX99469	Canola	nucleus	20.49	37.0
CDX78847	Canola	cytosol	16.59	28.57
Zm00001d006500_P001	Maize	cytosol	27.32	27.65
PGSC0003DMT400002031	Potato	extracellular	9.27	23.75
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	8.78	22.5

Protein Annotations

EnsemblPlants:Zm00001d012644_P001	EnsemblPlants:Zm00001d012644_T001	EnsemblPlantsGene:Zm00001d012644	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	ProteinID:AQL00113.1	SEG:seg	SUPFAM:SSF81383
UniParc:UPI0008436EFD	UniProt:A0A1D6GAI1	MapMan:19.2.2.8.1.4.6	:	:	:

Description

F-box protein

Coordinates

chr8:-:177767336..177768568

Molecular Weight (calculated)

43309.7 Da

IEP (calculated)

6.698

GRAVY (calculated)

-0.133

Length

410 amino acids

Sequence
(BLAST)

001: MEAAPRRQQQ QQEEEEEGCP CGGPEAADHF ERLHDAVLLD VLNRIGDVKA LGRCALVSRR FHALVPLVDS VFVRVDCVIP DDPPSSSSAG AAPGSPPHQA
101: PAPTARGRGA LARVARALLG GVARPIHALG QILSSAAATV SRRSEPLPAS PPPAPVADVS HHSPSEVLRS FRELRRLHIE LPTGELGIDD GVLLKWKADF
201: GSTLGSCVIL GASSVSSKSP AGSAQAETAA ADSAAAAPDT GRETEEPGSL PDSLYTNGGL KLRVVWTISS LIAASARHYL LHPIICNHGT LESLDLTDAD
301: GQGVLTMDKR QLQELRVRPV SPSGSSHRTL MPALSMRLHY APLIELPGGT LLKGATLVAI RPSEDALREG QGVAGPAGTC WISEAFEEPY RTAAKVLLKR
401: RAYCLEMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.