Factsheet for Os01t0770400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G306000.1	Wheat	cytosol	79.55	78.55
TraesCS3B01G340400.1	Wheat	cytosol	79.29	78.11
TraesCS3A01G296700.1	Wheat	cytosol	78.54	77.56
Zm00001d043324_P001	Maize	cytosol	74.75	73.82
Zm00001d012644_P001	Maize	cytosol	74.75	72.2
OQU78753	Sorghum	cytosol	66.92	71.43
EES03683	Sorghum	cytosol	75.25	71.29
EES01093	Sorghum	cytosol	73.99	70.1
Solyc02g070480.2.1	Tomato	cytosol	31.31	64.58
HORVU3Hr1G075050.2	Barley	plastid	76.77	63.47
Os05t0510400-02	Rice	cytosol	65.91	63.35
GSMUA_Achr4P31500_001	Banana	cytosol	53.03	63.06
GSMUA_Achr7P07910_001	Banana	cytosol	58.84	60.84
CDX78848	Canola	cytosol	14.9	60.82
GSMUA_Achr2P17340_001	Banana	cytosol	54.29	60.39
GSMUA_Achr5P02540_001	Banana	cytosol	51.01	60.3
GSMUA_Achr4P22940_001	Banana	cytosol	55.81	59.25
KRH11156	Soybean	cytosol, nucleus, vacuole	56.57	58.18
KRH21091	Soybean	cytosol	56.31	57.62
CDX99890	Canola	cytosol, golgi, nucleus	53.28	57.49
CDY33458	Canola	cytosol	52.02	57.22
CDX87738	Canola	cytosol	53.79	57.1
CDY26286	Canola	cytosol, nucleus, vacuole	53.79	56.95
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	53.79	56.95
VIT_10s0003g03880.t01	Wine grape	cytosol	57.32	56.89
Bra022022.1-P	Field mustard	cytosol	53.28	56.87
CDY43956	Canola	cytosol	53.28	56.57
PGSC0003DMT400054525	Potato	cytosol	52.27	56.4
AT4G18380.1	Thale cress	cytosol	53.79	56.05
CDX77641	Canola	cytosol	51.01	55.8
AT5G46170.1	Thale cress	cytosol, plastid	55.3	55.44
AT1G30200.2	Thale cress	cytosol	52.78	55.15
Bra025034.1-P	Field mustard	cytosol	52.02	55.08
Bra013303.1-P	Field mustard	cytosol	52.27	54.91
PGSC0003DMT400049024	Potato	cytosol	51.77	52.7
GSMUA_Achr11P...	Banana	extracellular	10.1	52.63
Solyc08g048430.2.1	Tomato	cytosol	42.42	51.53
GSMUA_Achr7P01170_001	Banana	mitochondrion	50.51	48.9
Os01t0812200-01	Rice	cytosol	42.17	47.31
Os03t0321300-01	Rice	cytosol	42.68	44.01
CDX99469	Canola	nucleus	22.22	38.77
Os05t0490300-01	Rice	mitochondrion	41.41	36.44
CDX78847	Canola	cytosol	17.68	29.41
PGSC0003DMT400002031	Potato	extracellular	9.6	23.75
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	7.83	19.38

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EntrezGene:4324608	EMBL:AK061585	ProteinID:BAB56069.1	ProteinID:BAF06291.1
ProteinID:BAS74546.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009506	GO:GO:0009719	GO:GO:0009736	GO:GO:0009914
GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	InterPro:IPR001810	EnsemblPlantsGene:Os01g0770400	EnsemblPlants:Os01t0770400-01
PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	UniProt:Q94EE7	SUPFAM:SSF81383
UniParc:UPI00000A660C	RefSeq:XP_015622176.1	SEG:seg	:	:	:

Description

F-box protein 40Cyclin-like F-box domain containing protein. (Os01t0770400-01);Similar to F-box domain containing protein. (Os01t0770400-02)

Coordinates

chr1:-:32508406..32511902

Molecular Weight (calculated)

41684.8 Da

IEP (calculated)

5.817

GRAVY (calculated)

-0.052

Length

396 amino acids

Sequence
(BLAST)

001: MEGHEGGEEE GLGDQFERLP DEVLLDVFGR IGDVKALGRC ALVSRRFHAL VPLVDSVFVR VDCVISDDPP PSSAGSAQAA AAAEGGPPAA RGRGALAHLA
101: RLVLGGIVRP IQALGQILSP AAATVSRRSA APPAAPAPAA ADVSHHSPSE VLRSFKELRR LHIELPTGEL GIEDGVLLKW KADFGSTLGS CVILGASSVT
201: SKPPPPPAAP PPTAADSSAA SPDSSREPDE LGNIPESLYT NGGLKLRVVW TISSLIAASA RHYLLQPIIA DHSTLESLDL TDADGQGVLT MDKRQLQELR
301: VRPVSASGNS HRTLMPALSM RLWYAPHIEL PGGQLLKGAT LVAIRPSEDV LREGGGIEVA GPTGASWILD AFEEPYRTAA QVLLKRRTYS LEMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.