Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0128900-01 | |
| Os07t0437000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G78100.1 | Os04t0128900-01 | AT4G28720.1 | 21798944 |
| AT1G78100.1 | Os07t0437000-01 | AT4G28720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G368000.1 | Wheat | cytosol | 84.42 | 84.18 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 83.29 | 82.58 |
| EES01639 | Sorghum | cytosol | 80.45 | 80.23 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 81.02 | 79.67 |
| Zm00001d043125_P001 | Maize | cytosol | 77.9 | 78.57 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 70.54 | 70.54 |
| GSMUA_Achr10P... | Banana | cytosol | 66.29 | 66.1 |
| Os05t0490300-01 | Rice | mitochondrion | 83.29 | 65.33 |
| Os03t0321300-01 | Rice | cytosol | 59.77 | 54.95 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 37.96 | 44.67 |
| Os01t0770400-01 | Rice | cytosol | 47.31 | 42.17 |
| Os05t0510400-02 | Rice | cytosol | 48.73 | 41.75 |
| Bra016384.1-P | Field mustard | cytosol | 22.66 | 40.0 |
| CDY46634 | Canola | cytosol | 30.31 | 38.49 |
| AT1G22220.1 | Thale cress | cytosol | 33.14 | 37.26 |
| CDY21348 | Canola | cytosol | 33.71 | 36.73 |
| Bra012314.1-P | Field mustard | cytosol | 32.86 | 36.48 |
| CDY41488 | Canola | cytosol | 32.86 | 36.36 |
| CDX91668 | Canola | cytosol | 32.86 | 36.36 |
| Bra031373.1-P | Field mustard | cytosol | 33.14 | 36.11 |
| CDY38235 | Canola | cytosol | 33.14 | 36.11 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 34.84 | 35.96 |
| CDY26850 | Canola | cytosol | 30.31 | 35.91 |
| CDY00435 | Canola | cytosol | 32.29 | 35.85 |
| Solyc04g072930.1.1 | Tomato | cytosol | 34.28 | 35.59 |
| PGSC0003DMT400024512 | Potato | cytosol | 33.43 | 34.71 |
| CDX88418 | Canola | cytosol | 31.44 | 34.58 |
| CDY14629 | Canola | cytosol | 26.63 | 34.43 |
| AT1G78100.1 | Thale cress | cytosol | 32.58 | 34.43 |
| Bra015630.1-P | Field mustard | cytosol | 31.16 | 34.27 |
| CDX87476 | Canola | cytosol | 31.16 | 34.27 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 20.11 | 34.13 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 32.58 | 33.72 |
| Bra008345.1-P | Field mustard | cytosol | 29.75 | 33.12 |
| PGSC0003DMT400097155 | Potato | cytosol | 30.88 | 31.14 |
| CDY32130 | Canola | cytosol | 20.68 | 26.94 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:4327364 | EMBL:AK072651 | EMBL:AK104334 | ProteinID:BAD68209.1 |
| ProteinID:BAF06508.1 | ProteinID:BAS74882.1 | ProteinID:EAZ13910.1 | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0009719 | GO:GO:0009736 | GO:GO:0009914 | GO:GO:0009987 | EnsemblPlantsGene:Os01g0812200 |
| EnsemblPlants:Os01t0812200-01 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF3 | UniProt:Q5VQR7 | SUPFAM:SSF81383 | UniParc:UPI0000457DC9 |
| RefSeq:XP_015622466.1 | : | : | : | : | : |
Description
F-box protein 46Cyclin-like F-box domain containing protein. (Os01t0812200-01)
Coordinates
chr1:+:34531774..34533771
Molecular Weight (calculated)
39066.2 Da
IEP (calculated)
8.697
GRAVY (calculated)
-0.148
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPRARIHAD PAPEFDQFDC LPDPVVLLIL NKLEDVRSLG RCAAVSKRFS GLVPLVSDVY VKIDRVVATD GDADDALNLS SAKPKNIFSH FFKLMLFTIV
101: KPFHSMRNLN GTGRPLFPLA QHSPVHVLRN FSDVWNLRVE LPSGDVGTEE GVLLKWRAEY GSTLRNCVIL GGTLVDRKPI GAEHESSVED NGSMPESFYT
201: NGGLKLRVVW TISSLIAAST RHYLLRSIIK DHPTLRSLVL ADADGQGTLY MGMEQLREFR ENKLSASACS NRTQVPACNM KLKYAPYLEL PGGMTLQGAT
301: LVVIKPSNDG GSGGHSSRKE TEAFVSSAFD EPFRFAVKAL MKRRTYLLEM NGF
101: KPFHSMRNLN GTGRPLFPLA QHSPVHVLRN FSDVWNLRVE LPSGDVGTEE GVLLKWRAEY GSTLRNCVIL GGTLVDRKPI GAEHESSVED NGSMPESFYT
201: NGGLKLRVVW TISSLIAAST RHYLLRSIIK DHPTLRSLVL ADADGQGTLY MGMEQLREFR ENKLSASACS NRTQVPACNM KLKYAPYLEL PGGMTLQGAT
301: LVVIKPSNDG GSGGHSSRKE TEAFVSSAFD EPFRFAVKAL MKRRTYLLEM NGF
001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
Arabidopsis Description
F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.