Factsheet for GSMUA_Achr10P29250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03360_001
GSMUA_Achr1P24210_001
GSMUA_Achr2P04250_001
GSMUA_Achr4P25050_001
GSMUA_Achr5P20550_001
GSMUA_Achr8P12830_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr1P03360_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr1P24210_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr2P04250_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr4P25050_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr5P20550_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr8P12830_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_AchrUn_...	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P21580_001	Banana	cytosol	80.79	81.02
EES19721	Sorghum	cytosol	72.03	72.03
Zm00001d038537_P001	Maize	cytosol	72.03	72.03
HORVU1Hr1G068570.1	Barley	cytosol	70.62	70.82
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	70.62	70.62
HORVU0Hr1G030450.1	Barley	cytosol	70.34	70.54
TraesCS1D01G307200.1	Wheat	cytosol	70.34	69.94
TraesCS1B01G318500.1	Wheat	cytosol	70.34	69.94
TraesCS1A01G307800.1	Wheat	cytosol	70.06	69.66
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	66.38	67.53
TraesCS3D01G518800.1	Wheat	cytosol	60.17	67.19
Os01t0812200-01	Rice	cytosol	66.1	66.29
EES01639	Sorghum	cytosol	66.1	66.1
TraesCS3B01G368000.1	Wheat	cytosol	65.54	65.54
GSMUA_Achr3P18400_001	Banana	cytosol	66.95	65.29
TraesCS3D01G329900.1	Wheat	cytosol	64.69	64.33
Zm00001d043125_P001	Maize	cytosol	62.99	63.71
GSMUA_Achr6P32090_001	Banana	cytosol	62.99	63.17
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	62.71	61.84
Os05t0490300-01	Rice	mitochondrion	69.49	54.67
GSMUA_Achr2P17340_001	Banana	cytosol	44.92	44.66
GSMUA_Achr4P22940_001	Banana	cytosol	46.89	44.5
GSMUA_Achr7P07910_001	Banana	cytosol	47.46	43.86
GSMUA_Achr4P31500_001	Banana	cytosol	40.96	43.54
VIT_18s0001g05310.t01	Wine grape	cytosol	36.44	43.0
GSMUA_Achr11P...	Banana	extracellular	9.04	42.11
GSMUA_Achr5P02540_001	Banana	cytosol	39.83	42.09
Bra016384.1-P	Field mustard	cytosol	22.32	39.5
CDY46634	Canola	cytosol	29.38	37.41
GSMUA_Achr7P01170_001	Banana	mitochondrion	42.94	37.16
CDY21348	Canola	cytosol	33.05	36.11
CDY00435	Canola	cytosol	32.2	35.85
Bra012314.1-P	Field mustard	cytosol	31.92	35.53
CDY41488	Canola	cytosol	31.92	35.42
AT1G22220.1	Thale cress	cytosol	31.36	35.35
PGSC0003DMT400024512	Potato	cytosol	33.9	35.29
CDX88418	Canola	cytosol	31.92	35.2
CDX91668	Canola	cytosol	31.36	34.8
Solyc04g072930.1.1	Tomato	cytosol	33.33	34.71
CDY38235	Canola	cytosol	31.64	34.57
Bra031373.1-P	Field mustard	cytosol	31.64	34.57
CDX87476	Canola	cytosol	30.79	33.96
Bra015630.1-P	Field mustard	cytosol	30.51	33.64
VIT_06s0009g03690.t01	Wine grape	cytosol	32.49	33.63
CDY26850	Canola	cytosol	28.25	33.56
AT1G78100.1	Thale cress	cytosol	31.07	32.93
VIT_06s0009g03670.t01	Wine grape	cytosol	31.07	32.26
GSMUA_Achr6P15980_001	Banana	mitochondrion	66.67	31.64
VIT_06s0009g03680.t01	Wine grape	cytosol	18.36	31.25
Bra008345.1-P	Field mustard	cytosol	27.97	31.23
CDY14629	Canola	cytosol	23.45	30.4
GSMUA_Achr10P...	Banana	cytosol	23.45	28.82
PGSC0003DMT400097155	Potato	cytosol	28.25	28.57
CDY32130	Canola	cytosol	20.34	26.57

Protein Annotations

EnsemblPlants:GSMUA_Achr10P29250_001	EnsemblPlants:GSMUA_Achr10T29250_001	EnsemblPlantsGene:GSMUA_Achr10G29250_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31215	PANTHER:PTHR31215:SF3	PFAM:PF12937	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000294C96A
UniProt:M0RME9	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

Putative F-box protein At4g18380 [Source:GMGC_GENE;Acc:GSMUA_Achr10G29250_001]

Coordinates

chr10:-:31857907..31859183

Molecular Weight (calculated)

39067.9 Da

IEP (calculated)

9.494

GRAVY (calculated)

-0.199

Length

354 amino acids

Sequence
(BLAST)

001: MQPKARVYAD PSRDLDEFER LPDSIVLLIF NKVADVRSLG RCSAVSKRFN SLVFLVHDVY LKFDHVVTID GDCDDPLSPS SPRHRRLFSN FVKLILSTLL
101: KPFHNLHSTN GGNKPIVPQL SHHSPAQILK NFAHVRNLRI ELLAGEVATE EGVILKWRAE FGSTIQNCVI FGGTRVDRKP VFSEHESPVE DSGSIPDSFY
201: TNGGLKLRVV WTINSLIAAS TRHYFLQPII KDHPTLKSLV LTDADGQGTL NMGVGQLKEF REKPPVASAA SNRTQVPASN MKLKYSPYLD LPGGMALQGA
301: TLVTIKPSSD GSSGTNTNTT ESDAFIFGAF EGPFKAAAKS LMKRRTYLLE MNGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.