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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDX97452
CDY06876
CDY13521
CDY14230
CDY16470
CDY35214
CDY39073
CDY40610
CDY40611
CDY72645

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78100.1 CDX68112 AT1G75950.1 12169662
AT1G78100.1 CDX73212 AT1G75950.1 12169662
AT1G78100.1 CDX80590 AT1G75950.1 12169662
AT1G78100.1 CDX85931 AT1G75950.1 12169662
AT1G78100.1 CDX87650 AT1G75950.1 12169662
AT1G78100.1 CDY13521 AT1G75950.1 12169662
AT1G78100.1 CDY39073 AT1G75950.1 12169662
AT1G78100.1 CDX77280 AT3G60010.1 12169662
AT1G78100.1 CDX93698 AT3G60010.1 12169662
AT1G78100.1 CDX93699 AT3G60010.1 12169662
AT1G78100.1 CDY16470 AT3G60010.1 12169662
AT1G78100.1 CDY40610 AT3G60010.1 12169662
AT1G78100.1 CDY40611 AT3G60010.1 12169662
AT1G78100.1 CDX97452 AT4G28720.1 21798944
AT1G78100.1 CDY06876 AT4G28720.1 21798944
AT1G78100.1 CDY14230 AT4G28720.1 21798944
AT1G78100.1 CDY35214 AT4G28720.1 21798944
AT1G78100.1 CDY72645 AT4G28720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY14629 Canola cytosol 80.87 88.28
Bra008345.1-P Field mustard cytosol 92.62 87.07
CDX88418 Canola cytosol 73.15 67.91
CDX87476 Canola cytosol 72.82 67.6
AT1G78100.1 Thale cress cytosol 74.83 66.77
CDY41488 Canola cytosol 58.05 54.23
CDX91668 Canola cytosol 57.72 53.92
CDY00435 Canola cytosol 57.05 53.46
CDY38235 Canola cytosol 56.71 52.16
CDY21348 Canola cytosol 56.38 51.85
CDY46634 Canola cytosol 45.97 49.28
VIT_18s0001g05310.t01 Wine grape cytosol 47.99 47.67
PGSC0003DMT400024512 Potato cytosol 47.32 41.47
Solyc04g072930.1.1 Tomato cytosol 47.32 41.47
CDY32130 Canola cytosol 34.23 37.64
Zm00001d006501_P001 Maize cytosol 25.84 35.32
CDX78848 Canola cytosol 10.4 31.96
TraesCS3D01G329900.1 Wheat cytosol 37.25 31.18
TraesCS3B01G368000.1 Wheat cytosol 36.58 30.79
Os01t0812200-01 Rice cytosol 35.91 30.31
GSMUA_Achr7P21580_001 Banana cytosol 35.57 30.03
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome 34.56 29.6
TraesCS3A01G336900.1 Wheat cytosol, peroxisome, plastid 35.57 29.53
TraesCS1A01G307800.1 Wheat cytosol 35.23 29.49
TraesCS1B01G318500.1 Wheat cytosol 35.23 29.49
HORVU0Hr1G030450.1 Barley cytosol 34.9 29.46
HORVU1Hr1G068570.1 Barley cytosol 34.9 29.46
TraesCS1D01G307200.1 Wheat cytosol 34.9 29.21
Zm00001d043125_P001 Maize cytosol 34.23 29.14
Zm00001d038537_P001 Maize cytosol 34.56 29.1
EES01639 Sorghum cytosol 34.56 29.1
CDX77641 Canola cytosol 35.23 29.01
EER94941 Sorghum cytosol, peroxisome, plastid 36.91 28.95
HORVU4Hr1G052070.1 Barley cytosol 35.57 28.88
TraesCS4A01G127600.1 Wheat cytosol, peroxisome, plastid 35.91 28.84
Zm00001d010640_P001 Maize cytosol, peroxisome, plastid 34.23 28.81
EES19721 Sorghum cytosol 34.23 28.81
TraesCS4D01G178800.1 Wheat cytosol, peroxisome, plastid 35.57 28.8
TraesCS3D01G518800.1 Wheat cytosol 30.54 28.71
CDY33458 Canola cytosol 34.56 28.61
CDX99890 Canola cytosol, golgi, nucleus 35.23 28.61
TraesCS4B01G177100.1 Wheat cytosol 35.57 28.57
CDY26286 Canola cytosol, nucleus, vacuole 35.57 28.34
GSMUA_Achr10P... Banana cytosol 33.56 28.25
Os03t0321300-01 Rice cytosol 35.91 27.86
CDY43956 Canola cytosol 34.56 27.61
GSMUA_Achr3P18400_001 Banana cytosol 33.56 27.55
CDX87738 Canola cytosol 33.89 27.08
Zm00001d028957_P001 Maize cytosol 31.54 27.01
Zm00001d043016_P001 Maize plastid 22.82 26.67
GSMUA_Achr6P32090_001 Banana cytosol 30.87 26.06
Zm00001d047573_P001 Maize plastid 36.24 24.83
Os05t0490300-01 Rice mitochondrion 35.91 23.78
CDX99469 Canola nucleus 15.1 19.82
CDX78847 Canola cytosol 13.09 16.39
GSMUA_Achr6P15980_001 Banana mitochondrion 33.56 13.4
Protein Annotations
EnsemblPlants:CDY26850EnsemblPlantsGene:GSBRNA2T00036515001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfPANTHER:PTHR31215ProteinID:CDY26850ProteinID:CDY26850.1SUPFAM:SSF81383UniParc:UPI0004EEDA01
UniProt:A0A078GJX7MapMan:19.2.2.8.1.4.6::::
Description
BnaA02g18750DBnaA02g18750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJX7]
Coordinates
chrLK032195:+:181289..182293
Molecular Weight (calculated)
32759.2 Da
IEP (calculated)
6.556
GRAVY (calculated)
-0.156
Length
298 amino acids
Sequence
(BLAST)
001: MDAFDAIPDP VVIDILNKVR DVKTLIRCRS VSKRFNSLAT ESGSLLLQLD QIGESDSEKD STITSFFRSL FKSVNGLFPI FSKPAKPARI LTPVQILAGF
101: NRIRNLDVEF YGGDFKLEKG AAVKWKAEFG ESLKSCVIVA FRSATVNTSA IDGDAETDSE FVSGLKTRVV WTISALMAAS TRHYQMRDLV KEHKEMETLT
201: VRDRDGEGAT EARGDEKVSR ERTVVPNVRM SMRNAPSLKL ESGICLEAAT LVVVRQSGVA SDGDDAELAT GAFGDCMYGE AVAALLKRRR NVLEMNSF
Best Arabidopsis Sequence Match ( AT1G78100.1 )
(BLAST)
001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF
Arabidopsis Description
AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.