Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 92.99 | 93.75 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 89.49 | 90.46 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 85.18 | 85.18 |
| Zm00001d006501_P001 | Maize | cytosol | 47.17 | 80.28 |
| Os03t0321300-01 | Rice | cytosol | 80.59 | 77.86 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 77.09 | 75.26 |
| Zm00001d028957_P001 | Maize | cytosol | 66.85 | 71.26 |
| Zm00001d047573_P001 | Maize | plastid | 76.01 | 64.83 |
| Zm00001d043016_P001 | Maize | plastid | 44.47 | 64.71 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 56.06 | 58.76 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 55.8 | 58.15 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 52.56 | 55.24 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 36.93 | 45.67 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 43.4 | 38.8 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 41.78 | 38.56 |
| PGSC0003DMT400024512 | Potato | cytosol | 34.23 | 37.35 |
| Solyc04g072930.1.1 | Tomato | cytosol | 33.69 | 36.76 |
| Bra016384.1-P | Field mustard | cytosol | 19.41 | 36.0 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 33.15 | 35.96 |
| CDY26850 | Canola | cytosol | 28.57 | 35.57 |
| CDX88418 | Canola | cytosol | 30.46 | 35.2 |
| CDX87476 | Canola | cytosol | 29.92 | 34.58 |
| Bra015630.1-P | Field mustard | cytosol | 29.92 | 34.58 |
| AT1G22220.1 | Thale cress | cytosol | 29.11 | 34.39 |
| Bra012314.1-P | Field mustard | cytosol | 29.38 | 34.28 |
| CDY46634 | Canola | cytosol | 25.61 | 34.17 |
| CDY14629 | Canola | cytosol | 25.07 | 34.07 |
| CDY21348 | Canola | cytosol | 29.65 | 33.95 |
| AT1G78100.1 | Thale cress | cytosol | 30.46 | 33.83 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 31.0 | 33.72 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 18.87 | 33.65 |
| CDY00435 | Canola | cytosol | 28.57 | 33.33 |
| CDY38235 | Canola | cytosol | 28.84 | 33.02 |
| CDY41488 | Canola | cytosol | 28.3 | 32.92 |
| Bra031373.1-P | Field mustard | cytosol | 28.57 | 32.72 |
| Bra008345.1-P | Field mustard | cytosol | 27.76 | 32.49 |
| CDX91668 | Canola | cytosol | 27.76 | 32.29 |
| PGSC0003DMT400097155 | Potato | cytosol | 29.38 | 31.14 |
| CDY32130 | Canola | cytosol | 18.87 | 25.83 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G177100.1 | EnsemblPlantsGene:TraesCS4B01G177100 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF5 | PFAM:PF12937 |
| SEG:seg | SUPFAM:SSF81383 | MapMan:19.2.2.8.1.4.6 | : | : | : |
Description
No Description!
Coordinates
chr4B:-:387510232..387511660
Molecular Weight (calculated)
39860.8 Da
IEP (calculated)
7.204
GRAVY (calculated)
-0.155
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSRHRVFAE DLLLAQPQGE DHFDSVPDSL VLLIFNKLAD ARSLGRCSAV SRRFNALVPL VDDACLRIDR VIAAGDADDA LGVPGGPRQR GVLSSLLKTV
101: LLAVLKPFGH CDAGARPGGH AGGKHAPHHS PAQVLKNFSS IRNLRMELPV SDVGTDDGVL LRWKAVFGTT LQSCVILGGT RLEHASHPHA PSAPDDHDAS
201: APQSQGDDDN GSIPESFYTN GGLKLRVVWT ISSLIAAATR HYLLREIVKE HPTLERVELT DAHGQGTLCM ERPQLKEFTD KPLAAAAAAN RTQVPACNMK
301: LRYAPMLELS DGTRIQGATL VVIKPVGEAG GIGGGRKELD EFVAGAFDGP FREAVAMLSK RRTYLLEMNG F
101: LLAVLKPFGH CDAGARPGGH AGGKHAPHHS PAQVLKNFSS IRNLRMELPV SDVGTDDGVL LRWKAVFGTT LQSCVILGGT RLEHASHPHA PSAPDDHDAS
201: APQSQGDDDN GSIPESFYTN GGLKLRVVWT ISSLIAAATR HYLLREIVKE HPTLERVELT DAHGQGTLCM ERPQLKEFTD KPLAAAAAAN RTQVPACNMK
301: LRYAPMLELS DGTRIQGATL VVIKPVGEAG GIGGGRKELD EFVAGAFDGP FREAVAMLSK RRTYLLEMNG F
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.