Subcellular Localization
min:
: max
Winner_takes_all: cytosol, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G177100.1 | Wheat | cytosol | 93.75 | 92.99 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 90.22 | 90.46 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 87.77 | 87.06 |
| Zm00001d006501_P001 | Maize | cytosol | 46.74 | 78.9 |
| Os03t0321300-01 | Rice | cytosol | 80.71 | 77.34 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 76.63 | 74.21 |
| Zm00001d028957_P001 | Maize | cytosol | 66.85 | 70.69 |
| Zm00001d047573_P001 | Maize | plastid | 77.45 | 65.52 |
| Zm00001d043016_P001 | Maize | plastid | 44.02 | 63.53 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 56.79 | 58.71 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 56.52 | 58.43 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 47.83 | 55.52 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 52.72 | 54.96 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 36.96 | 45.33 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 44.57 | 38.41 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 41.58 | 38.15 |
| PGSC0003DMT400024512 | Potato | cytosol | 34.51 | 37.35 |
| Solyc04g072930.1.1 | Tomato | cytosol | 33.97 | 36.76 |
| CDY26850 | Canola | cytosol | 28.8 | 35.57 |
| Bra016384.1-P | Field mustard | cytosol | 19.29 | 35.5 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 32.88 | 35.38 |
| CDX88418 | Canola | cytosol | 30.16 | 34.58 |
| Bra015630.1-P | Field mustard | cytosol | 29.89 | 34.27 |
| CDX87476 | Canola | cytosol | 29.89 | 34.27 |
| CDY14629 | Canola | cytosol | 25.27 | 34.07 |
| AT1G22220.1 | Thale cress | cytosol | 28.8 | 33.76 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 19.02 | 33.65 |
| Bra012314.1-P | Field mustard | cytosol | 29.08 | 33.65 |
| CDY46634 | Canola | cytosol | 25.27 | 33.45 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 30.98 | 33.43 |
| CDY21348 | Canola | cytosol | 29.35 | 33.33 |
| AT1G78100.1 | Thale cress | cytosol | 30.16 | 33.23 |
| CDY00435 | Canola | cytosol | 28.26 | 32.7 |
| Bra008345.1-P | Field mustard | cytosol | 27.99 | 32.49 |
| CDY38235 | Canola | cytosol | 28.53 | 32.41 |
| CDY41488 | Canola | cytosol | 27.99 | 32.29 |
| Bra031373.1-P | Field mustard | cytosol | 28.26 | 32.1 |
| CDX91668 | Canola | cytosol | 27.45 | 31.66 |
| PGSC0003DMT400097155 | Potato | cytosol | 29.62 | 31.14 |
| CDY32130 | Canola | cytosol | 18.75 | 25.46 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G178800.1 | EnsemblPlantsGene:TraesCS4D01G178800 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF5 | PFAM:PF12937 |
| SEG:seg | SUPFAM:SSF81383 | MapMan:19.2.2.8.1.4.6 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:310110304..310111410
Molecular Weight (calculated)
39517.5 Da
IEP (calculated)
7.030
GRAVY (calculated)
-0.091
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSRHRVFAE DLLLAQLQGE DHFDSVPDSL VLLIFNKLAD ARSLGRCSAV SRRFNALVPL VDDACLHIDR VIAAGDADDA LGASGGPRQR GVLSSLLKTV
101: LLAVLKPFGH CDAGARPAGH AGGKHAPHHS PAQVLKNFSS IRNLRMELPV SDVGTDDGVL LRWKAVFGTT LQSCVILGGT RLDHASHAPS ASVAPEEHDA
201: SQGDDDNGSI PESFYTNGGL KLRVVWTISS LIAAATRHYL LREIVKEHPT LERVELTDAH GQGMLCMERP QLKEFTDKPL AAAAAANRTQ VPACNMKLRY
301: APMLELSDGT RIQGATLVVI KPVGEAGGIG GGRKELDEFV AGAFDGPFRE AVAMLSKRRT YLLEMNGF
101: LLAVLKPFGH CDAGARPAGH AGGKHAPHHS PAQVLKNFSS IRNLRMELPV SDVGTDDGVL LRWKAVFGTT LQSCVILGGT RLDHASHAPS ASVAPEEHDA
201: SQGDDDNGSI PESFYTNGGL KLRVVWTISS LIAAATRHYL LREIVKEHPT LERVELTDAH GQGMLCMERP QLKEFTDKPL AAAAAANRTQ VPACNMKLRY
301: APMLELSDGT RIQGATLVVI KPVGEAGGIG GGRKELDEFV AGAFDGPFRE AVAMLSKRRT YLLEMNGF
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.