Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G340400.1 | Wheat | cytosol | 96.51 | 96.27 |
TraesCS3A01G296700.1 | Wheat | cytosol | 95.76 | 95.76 |
Os01t0770400-01 | Rice | cytosol | 78.55 | 79.55 |
HORVU3Hr1G075050.2 | Barley | plastid | 88.53 | 74.11 |
Zm00001d043324_P001 | Maize | cytosol | 71.07 | 71.07 |
OQU78753 | Sorghum | cytosol | 65.09 | 70.35 |
EES03683 | Sorghum | cytosol | 72.07 | 69.14 |
Zm00001d012644_P001 | Maize | cytosol | 70.07 | 68.54 |
EES01093 | Sorghum | cytosol | 69.58 | 66.75 |
Solyc02g070480.2.1 | Tomato | cytosol | 31.17 | 65.1 |
CDX78848 | Canola | cytosol | 14.96 | 61.86 |
TraesCS1D01G331400.1 | Wheat | cytosol | 65.09 | 61.12 |
GSMUA_Achr4P31500_001 | Banana | cytosol | 50.12 | 60.36 |
GSMUA_Achr2P17340_001 | Banana | cytosol | 52.62 | 59.27 |
GSMUA_Achr5P02540_001 | Banana | cytosol | 49.38 | 59.1 |
GSMUA_Achr7P07910_001 | Banana | cytosol | 56.11 | 58.75 |
Bra022022.1-P | Field mustard | cytosol | 53.87 | 58.22 |
CDX87738 | Canola | cytosol | 54.11 | 58.18 |
CDY43956 | Canola | cytosol | 53.87 | 57.91 |
KRH11156 | Soybean | cytosol, nucleus, vacuole | 55.11 | 57.4 |
GSMUA_Achr4P22940_001 | Banana | cytosol | 53.37 | 57.37 |
CDY33458 | Canola | cytosol | 51.12 | 56.94 |
VIT_10s0003g03880.t01 | Wine grape | cytosol | 56.11 | 56.39 |
KRH21091 | Soybean | cytosol | 54.36 | 56.33 |
AT5G46170.1 | Thale cress | cytosol, plastid | 55.36 | 56.2 |
AT4G18380.1 | Thale cress | cytosol | 53.12 | 56.05 |
Bra013303.1-P | Field mustard | cytosol | 52.62 | 55.97 |
CDX77641 | Canola | cytosol | 50.37 | 55.8 |
CDY26286 | Canola | cytosol, nucleus, vacuole | 51.12 | 54.81 |
Bra025034.1-P | Field mustard | cytosol | 51.12 | 54.81 |
Bra032364.1-P | Field mustard | cytosol, nucleus, vacuole | 51.12 | 54.81 |
PGSC0003DMT400054525 | Potato | cytosol | 50.12 | 54.77 |
AT1G30200.2 | Thale cress | cytosol | 51.62 | 54.62 |
CDX99890 | Canola | cytosol, golgi, nucleus | 49.88 | 54.5 |
PGSC0003DMT400049024 | Potato | cytosol | 50.12 | 51.67 |
GSMUA_Achr11P... | Banana | extracellular | 9.73 | 51.32 |
Solyc08g048430.2.1 | Tomato | cytosol | 41.4 | 50.92 |
GSMUA_Achr7P01170_001 | Banana | mitochondrion | 49.13 | 48.17 |
TraesCS1D01G307200.1 | Wheat | cytosol | 42.64 | 48.03 |
TraesCS3D01G329900.1 | Wheat | cytosol | 42.39 | 47.75 |
TraesCS3D01G518800.1 | Wheat | cytosol | 36.41 | 46.06 |
TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 38.15 | 41.58 |
CDX99469 | Canola | nucleus | 20.95 | 37.0 |
CDX78847 | Canola | cytosol | 18.2 | 30.67 |
PGSC0003DMT400002031 | Potato | extracellular | 9.73 | 24.38 |
PGSC0003DMT400054900 | Potato | extracellular, plasma membrane | 8.23 | 20.62 |
Protein Annotations
EnsemblPlants:TraesCS3D01G306000.1 | EnsemblPlantsGene:TraesCS3D01G306000 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF7 | PFAM:PF12937 |
PFscan:PS50181 | SEG:seg | SUPFAM:SSF81383 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
No Description!
Coordinates
chr3D:-:419880339..419881717
Molecular Weight (calculated)
42628.1 Da
IEP (calculated)
5.292
GRAVY (calculated)
-0.008
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGREGWPC AAAAAGEAVA EEGEEDQFDR LPDAVLLDVF NRIGDVKALG RCALVSRRFH GLVPLVDSVF VRVDCVIPDE PAPASAGSPQ AAAPSRGRGA
101: LAHIARLVLG GIVRPIQALG QILSPTLAIV SRRSVAPPPA SPPPPAGDIS HHSPSEVLRS FKELRSLRIE LPTGELGIDD GVLLKWKADF GSTLGSCVIL
201: GASSVSSKPL LPTMSSPDAA DSEAASLDDN REPEELASIP ESLHTNGGLK LRVVWTISSL IAASARHYLL QPIIADHEML DSLNLTDADG QGVLTMDKKQ
301: LQELRVRPVS VSGNSHRTLM PALIMRLWYA PHIELPGGVL LKGATLVAIR PSDDVLREGG GVEAAGPAGA SWISDAFEEP YRTAAKVLFK RRTYSLEMNS
401: F
101: LAHIARLVLG GIVRPIQALG QILSPTLAIV SRRSVAPPPA SPPPPAGDIS HHSPSEVLRS FKELRSLRIE LPTGELGIDD GVLLKWKADF GSTLGSCVIL
201: GASSVSSKPL LPTMSSPDAA DSEAASLDDN REPEELASIP ESLHTNGGLK LRVVWTISSL IAASARHYLL QPIIADHEML DSLNLTDADG QGVLTMDKKQ
301: LQELRVRPVS VSGNSHRTLM PALIMRLWYA PHIELPGGVL LKGATLVAIR PSDDVLREGG GVEAAGPAGA SWISDAFEEP YRTAAKVLFK RRTYSLEMNS
401: F
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.