Factsheet for TraesCS3A01G296700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G306000.1	Wheat	cytosol	95.76	95.76
TraesCS3B01G340400.1	Wheat	cytosol	95.51	95.27
Os01t0770400-01	Rice	cytosol	77.56	78.54
HORVU3Hr1G075050.2	Barley	plastid	87.53	73.28
Zm00001d043324_P001	Maize	cytosol	72.32	72.32
OQU78753	Sorghum	cytosol	64.59	69.81
Zm00001d012644_P001	Maize	cytosol	70.57	69.02
EES03683	Sorghum	cytosol	71.82	68.9
EES01093	Sorghum	cytosol	69.33	66.51
Solyc02g070480.2.1	Tomato	cytosol	31.17	65.1
CDX78848	Canola	cytosol	14.96	61.86
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	64.59	61.52
GSMUA_Achr4P31500_001	Banana	cytosol	50.87	61.26
GSMUA_Achr2P17340_001	Banana	cytosol	53.12	59.83
GSMUA_Achr5P02540_001	Banana	cytosol	49.88	59.7
Bra022022.1-P	Field mustard	cytosol	54.86	59.3
GSMUA_Achr7P07910_001	Banana	cytosol	56.36	59.01
CDY43956	Canola	cytosol	54.86	58.98
CDX87738	Canola	cytosol	54.86	58.98
GSMUA_Achr4P22940_001	Banana	cytosol	54.11	58.18
KRH11156	Soybean	cytosol, nucleus, vacuole	55.36	57.66
CDY33458	Canola	cytosol	51.62	57.5
VIT_10s0003g03880.t01	Wine grape	cytosol	57.11	57.39
AT5G46170.1	Thale cress	cytosol, plastid	56.11	56.96
KRH21091	Soybean	cytosol	54.86	56.85
CDX77641	Canola	cytosol	51.12	56.63
Bra013303.1-P	Field mustard	cytosol	52.87	56.23
AT4G18380.1	Thale cress	cytosol	53.12	56.05
Bra025034.1-P	Field mustard	cytosol	51.62	55.35
PGSC0003DMT400054525	Potato	cytosol	50.62	55.31
AT1G30200.2	Thale cress	cytosol	52.12	55.15
CDY26286	Canola	cytosol, nucleus, vacuole	51.37	55.08
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	51.37	55.08
CDX99890	Canola	cytosol, golgi, nucleus	50.37	55.04
PGSC0003DMT400049024	Potato	cytosol	50.62	52.19
Solyc08g048430.2.1	Tomato	cytosol	41.9	51.53
GSMUA_Achr11P...	Banana	extracellular	9.73	51.32
GSMUA_Achr7P01170_001	Banana	mitochondrion	49.13	48.17
TraesCS1A01G307800.1	Wheat	cytosol	42.39	47.75
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	40.65	45.4
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	38.15	41.24
CDX99469	Canola	nucleus	21.2	37.44
CDX78847	Canola	cytosol	18.45	31.09
PGSC0003DMT400002031	Potato	extracellular	9.98	25.0
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	8.73	21.88

Protein Annotations

EnsemblPlants:TraesCS3A01G296700.1	EnsemblPlantsGene:TraesCS3A01G296700	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	PFAM:PF12937
PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:

Description

No Description!

Coordinates

chr3A:+:531447012..531451753

Molecular Weight (calculated)

42791.3 Da

IEP (calculated)

5.460

GRAVY (calculated)

-0.054

Length

401 amino acids

Sequence
(BLAST)

001: MEEGREGWPC AAAGKAVAAE EGEEEDQFDR LPDAVLLDVF NRIGDVKALG RCALVSRRFH GLVPLVDSVF VRVDCVIPDE PAPSSAGSPQ AAAPSRGRGA
101: LAHIARLVLG GIVRPIQALG QILSPTLAIV SRRSVALPPA SPPPPAGDVS HHSPSEVLRS FKELRSLRIE LPTGELGIDD GVLLKWKADF GSTLGSCVIL
201: GASSVSSKPL QSPMSSPNAE DSEATSLDDN REPEELASIP ESLHTNGGLK LRVVWTISSL IAASARHYLL QPIIADHEML DSLNLTDADG QGVLTMDKKQ
301: LQELRVRPVS VSGNSHRTLM PALIMRLWYA PHIELPGGVL LKGATLVAIR PSDDVLREGG GVEAAGPAGA SWISDAFEEP YRTAAKVLFK RRTYSLEMNS
401: F

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.