Factsheet for Os03t0321300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0128900-01
Os07t0437000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	Os04t0128900-01	AT4G28720.1	21798944
AT1G78100.1	Os07t0437000-01	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006501_P001	Maize	cytosol	47.14	83.03
HORVU4Hr1G052070.1	Barley	cytosol	77.34	80.93
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	77.34	80.71
TraesCS4B01G177100.1	Wheat	cytosol	77.86	80.59
EER94941	Sorghum	cytosol, peroxisome, plastid	78.91	79.74
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	74.22	76.82
Zm00001d028957_P001	Maize	cytosol	66.67	73.56
Zm00001d047573_P001	Maize	plastid	77.34	68.28
Zm00001d043016_P001	Maize	plastid	43.49	65.49
Os01t0812200-01	Rice	cytosol	54.95	59.77
GSMUA_Achr6P32090_001	Banana	cytosol	52.86	57.51
Os05t0490300-01	Rice	mitochondrion	56.51	48.22
VIT_18s0001g05310.t01	Wine grape	cytosol	35.94	46.0
Os01t0770400-01	Rice	cytosol	44.01	42.68
Os05t0510400-02	Rice	cytosol	44.53	41.5
Solyc04g072930.1.1	Tomato	cytosol	33.85	38.24
PGSC0003DMT400024512	Potato	cytosol	33.33	37.65
Bra016384.1-P	Field mustard	cytosol	19.27	37.0
CDY46634	Canola	cytosol	26.3	36.33
CDY26850	Canola	cytosol	27.86	35.91
Bra012314.1-P	Field mustard	cytosol	29.69	35.85
VIT_06s0009g03690.t01	Wine grape	cytosol	31.77	35.67
Bra015630.1-P	Field mustard	cytosol	29.69	35.51
CDX87476	Canola	cytosol	29.69	35.51
CDX88418	Canola	cytosol	29.69	35.51
CDY21348	Canola	cytosol	29.95	35.49
AT1G22220.1	Thale cress	cytosol	28.91	35.35
CDY00435	Canola	cytosol	28.91	34.91
VIT_06s0009g03670.t01	Wine grape	cytosol	30.99	34.9
AT1G78100.1	Thale cress	cytosol	30.21	34.73
Bra031373.1-P	Field mustard	cytosol	29.17	34.57
CDY38235	Canola	cytosol	28.91	34.26
CDY14629	Canola	cytosol	24.22	34.07
CDX91668	Canola	cytosol	28.12	33.86
CDY41488	Canola	cytosol	28.12	33.86
VIT_06s0009g03680.t01	Wine grape	cytosol	18.23	33.65
Bra008345.1-P	Field mustard	cytosol	26.82	32.49
PGSC0003DMT400097155	Potato	cytosol	29.17	32.0
CDY32130	Canola	cytosol	18.75	26.57

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EntrezGene:4332677	ProteinID:ABF95667.1	EMBL:AK071172	ProteinID:BAF11873.1
ProteinID:BAS83940.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009506
GO:GO:0009719	GO:GO:0009736	GO:GO:0009914	GO:GO:0009987	InterPro:IPR001810	EnsemblPlantsGene:Os03g0321300
EnsemblPlants:Os03t0321300-01	PFAM:PF12937	PANTHER:PTHR31215	PANTHER:PTHR31215:SF5	UniProt:Q10M69	SUPFAM:SSF81383
UniParc:UPI0000DB45F9	RefSeq:XP_015628491.1	SEG:seg	:	:	:

Description

F-box protein 137Cyclin-like F-box domain containing protein. (Os03t0321300-01)

Coordinates

chr3:+:11613231..11614737

Molecular Weight (calculated)

40682.7 Da

IEP (calculated)

7.891

GRAVY (calculated)

-0.121

Length

384 amino acids

Sequence
(BLAST)

001: MQSRHRVFAE DLLLPREAEG EDHFDRVPDS LVLLIFNRLA DARSLGRCSA VSKRFNSLVP LVDDACLRID RVITDAADAD DALGLAGPRP AGRGVLSHLL
101: KAMLLAVLKP FGHCDAGVRG GGGGERAGKH GGGGGGCGAQ QHHSPAQVLK NFSSIRNLRM ELPVSDVGTD DGVLLRWKAV FGSTLQSCVI LGGTRVDRAA
201: APAAAAATAT AAGDSEASQG DDTGSIPESF YTNGGLKLRV VWTISSLIAA ATRHYLLREI VKEHPTLERV ALTDAHGQGT LSMGRDQIRE FRDKPLAAAA
301: AANRTQVPAC NMKLRYAPML ELSDGTRIQG ATLVVIKPVG EAGGIGGGRK ELDEFVADAF DGPYREAVSA LSKRRTYLLE MNGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.