CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDX97452
CDY06876
CDY13521
CDY14230
CDY16470
CDY35214
CDY39073
CDY40610
CDY40611
CDY72645

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	CDX68112	AT1G75950.1	12169662
AT1G78100.1	CDX73212	AT1G75950.1	12169662
AT1G78100.1	CDX80590	AT1G75950.1	12169662
AT1G78100.1	CDX85931	AT1G75950.1	12169662
AT1G78100.1	CDX87650	AT1G75950.1	12169662
AT1G78100.1	CDY13521	AT1G75950.1	12169662
AT1G78100.1	CDY39073	AT1G75950.1	12169662
AT1G78100.1	CDX77280	AT3G60010.1	12169662
AT1G78100.1	CDX93698	AT3G60010.1	12169662
AT1G78100.1	CDX93699	AT3G60010.1	12169662
AT1G78100.1	CDY16470	AT3G60010.1	12169662
AT1G78100.1	CDY40610	AT3G60010.1	12169662
AT1G78100.1	CDY40611	AT3G60010.1	12169662
AT1G78100.1	CDX97452	AT4G28720.1	21798944
AT1G78100.1	CDY06876	AT4G28720.1	21798944
AT1G78100.1	CDY14230	AT4G28720.1	21798944
AT1G78100.1	CDY35214	AT4G28720.1	21798944
AT1G78100.1	CDY72645	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26850	Canola	cytosol	88.28	80.87
Bra008345.1-P	Field mustard	cytosol	80.22	69.09
CDX88418	Canola	cytosol	68.13	57.94
CDX87476	Canola	cytosol	67.77	57.63
AT1G78100.1	Thale cress	cytosol	68.86	56.29
CDY41488	Canola	cytosol	57.51	49.22
CDX91668	Canola	cytosol	57.14	48.9
CDY00435	Canola	cytosol	56.41	48.43
CDY38235	Canola	cytosol	56.04	47.22
CDY21348	Canola	cytosol	55.68	46.91
CDY46634	Canola	cytosol	44.32	43.53
VIT_18s0001g05310.t01	Wine grape	cytosol	45.42	41.33
CDY32130	Canola	cytosol	36.26	36.53
PGSC0003DMT400024512	Potato	cytosol	43.59	35.0
Solyc04g072930.1.1	Tomato	cytosol	43.59	35.0
Zm00001d006501_P001	Maize	cytosol	27.84	34.86
CDX78848	Canola	cytosol	11.72	32.99
TraesCS3D01G329900.1	Wheat	cytosol	35.53	27.25
TraesCS3B01G368000.1	Wheat	cytosol	34.8	26.84
Os01t0812200-01	Rice	cytosol	34.43	26.63
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	34.8	26.46
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	33.7	26.44
EES01639	Sorghum	cytosol	33.33	25.71
Zm00001d043125_P001	Maize	cytosol	32.6	25.43
CDX77641	Canola	cytosol	33.7	25.41
CDX99890	Canola	cytosol, golgi, nucleus	34.07	25.34
HORVU4Hr1G052070.1	Barley	cytosol	34.07	25.34
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	34.43	25.34
CDY33458	Canola	cytosol	33.33	25.28
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	34.07	25.27
EER94941	Sorghum	cytosol, peroxisome, plastid	35.16	25.26
GSMUA_Achr7P21580_001	Banana	cytosol	32.6	25.21
Zm00001d038537_P001	Maize	cytosol	32.6	25.14
CDY26286	Canola	cytosol, nucleus, vacuole	34.43	25.13
TraesCS4B01G177100.1	Wheat	cytosol	34.07	25.07
TraesCS1D01G307200.1	Wheat	cytosol	32.6	25.0
TraesCS1B01G318500.1	Wheat	cytosol	32.6	25.0
TraesCS1A01G307800.1	Wheat	cytosol	32.6	25.0
HORVU1Hr1G068570.1	Barley	cytosol	32.23	24.93
HORVU0Hr1G030450.1	Barley	cytosol	32.23	24.93
CDX87738	Canola	cytosol	33.33	24.4
Zm00001d043016_P001	Maize	plastid	22.71	24.31
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	31.5	24.29
EES19721	Sorghum	cytosol	31.5	24.29
TraesCS3D01G518800.1	Wheat	cytosol	28.21	24.29
Os03t0321300-01	Rice	cytosol	34.07	24.22
CDY43956	Canola	cytosol	32.97	24.13
GSMUA_Achr3P18400_001	Banana	cytosol	31.87	23.97
GSMUA_Achr10P...	Banana	cytosol	30.4	23.45
Zm00001d028957_P001	Maize	cytosol	28.94	22.7
GSMUA_Achr6P32090_001	Banana	cytosol	29.3	22.66
Zm00001d047573_P001	Maize	plastid	33.7	21.15
Os05t0490300-01	Rice	mitochondrion	34.43	20.89
CDX99469	Canola	nucleus	12.82	15.42
CDX78847	Canola	cytosol	10.62	12.18
GSMUA_Achr6P15980_001	Banana	mitochondrion	31.5	11.53

Protein Annotations

EnsemblPlants:CDY14629	EnsemblPlantsGene:GSBRNA2T00084376001	PANTHER:PTHR31215	ProteinID:CDY14629	ProteinID:CDY14629.1	UniParc:UPI0004EE872A
UniProt:A0A078FP09	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

BnaC02g24840DBnaC02g24840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP09]

Coordinates

chrLK032045:-:445779..446903

Molecular Weight (calculated)

30052.9 Da

IEP (calculated)

6.164

GRAVY (calculated)

-0.210

Length

273 amino acids

Sequence
(BLAST)

001: MDAFDAIPDP VGHRHSEQNS LLLQLDQIGE SDSEKDSAIT SFFRSLFKSV NGFFPIFSKP AKILTPVKIL AGFDQIRNLD VKFYGGDFKL EKGAAVKWKA
101: EFGESLKSCV IVAFRSATVN TLAIDGDAET DSEFVSGLKT RVVWTISALM AASTRHYQMR DLVKEHKEME KLTVRDRDGE GATEARGDEK VSRERTVVPN
201: VRMSMRNAPS LKLKSGICLE AATLVVVRPS GVASDDEDAE LATGAFGFGD CMYGEAVAAL LKRRRNVLEM NSF

Best Arabidopsis Sequence Match ( AT1G22220.1 )
(BLAST)

001: MDVFDGLPDP IIVDILNKVG DVKTLLRCSS LSKRFNSLVP QSESLTLRLD HSVSDSPVVT SIFRSLFNGL VSLLSKPAKP ITITTLSPSL PFKILSRFDR
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF

Arabidopsis Description

AUF2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7K5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.