Factsheet for Bra034004.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67340.1	Bra012213.1-P	AT1G20140.1	12169662
AT1G67340.1	Bra012214.1-P	AT1G20140.1	12169662
AT1G67340.1	Bra012216.1-P	AT1G20140.1	12169662
AT1G67340.1	Bra025795.1-P	AT1G20140.1	12169662
AT1G67340.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G67340.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G67340.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G67340.1	Bra014159.1-P	AT3G60010.1	12169662
AT1G67340.1	Bra018756.1-P	AT3G60010.1	12169662
AT1G67340.1	Bra018757.1-P	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12640	Canola	nucleus, plastid	86.74	94.78
CDY51342	Canola	nucleus	84.35	92.44
Bra004220.1-P	Field mustard	nucleus	80.37	81.45
Bra004092.1-P	Field mustard	mitochondrion	74.8	76.84
AT1G67340.1	Thale cress	mitochondrion, plastid	72.41	72.03
PGSC0003DMT400074839	Potato	nucleus	63.13	63.47
Solyc05g015420.2.1	Tomato	mitochondrion	63.66	62.18
VIT_01s0010g03630.t01	Wine grape	nucleus	62.33	61.04
GSMUA_Achr8P17530_001	Banana	mitochondrion	57.29	60.5
GSMUA_Achr9P29380_001	Banana	mitochondrion	52.25	59.7
GSMUA_Achr9P01480_001	Banana	nucleus	53.58	58.38
Bra022516.1-P	Field mustard	cytosol	51.19	58.13
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	53.58	57.39
GSMUA_Achr5P25110_001	Banana	nucleus	52.25	53.24
GSMUA_Achr11P...	Banana	nucleus	49.6	52.68
TraesCS2B01G299700.1	Wheat	nucleus	52.79	51.69
Zm00001d012016_P001	Maize	nucleus	52.25	51.57
Zm00001d025218_P001	Maize	nucleus	50.93	51.47
HORVU2Hr1G069440.2	Barley	nucleus	52.25	51.44
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	51.99	50.52
TraesCS3B01G467900.1	Wheat	nucleus	51.19	50.39
TraesCS3A01G429900.1	Wheat	nucleus	51.19	50.39
Os04t0385600-01	Rice	nucleus	52.79	50.38
Zm00001d042328_P001	Maize	nucleus	51.99	50.26
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.87	50.13
Zm00001d003993_P001	Maize	mitochondrion, nucleus	52.79	50.13
TraesCS3D01G425300.1	Wheat	nucleus	50.93	50.0
KXG34006	Sorghum	nucleus	51.72	49.49
TraesCS2D01G281100.1	Wheat	nucleus	52.79	47.38
TraesCS2A01G282300.1	Wheat	nucleus	52.79	47.38
OQU81347	Sorghum	mitochondrion, nucleus	51.46	47.2
HORVU3Hr1G094600.2	Barley	plastid	51.46	46.97
Zm00001d049186_P001	Maize	mitochondrion	40.32	46.34
EES09728	Sorghum	cytosol, nucleus, plastid	41.11	46.27
GSMUA_Achr9P07210_001	Banana	nucleus	37.4	46.23
Os11t0488900-00	Rice	mitochondrion	43.5	45.81
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	45.09	44.85
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	26.79	44.3
GSMUA_Achr8P00700_001	Banana	plastid	51.19	44.16
HORVU4Hr1G080860.1	Barley	mitochondrion	23.34	43.35
HORVU2Hr1G081910.1	Barley	mitochondrion	22.81	43.0
Zm00001d016505_P001	Maize	mitochondrion	32.63	32.63
KXG30224	Sorghum	mitochondrion	24.93	30.52
Os05t0388151-00	Rice	nucleus	15.12	30.32

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	EnsemblPlantsGene:Bra034004	EnsemblPlants:Bra034004.1	EnsemblPlants:Bra034004.1-P
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002893	InterPro:IPR011990
UniProt:M4EYW2	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232
SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002545F10	InterPro:Znf_MYND	SEG:seg

Description

AT1G67340 (E=7e-157) | zinc finger (MYND type) family protein / F-box family protein

Coordinates

chrA02:+:10315603..10317246

Molecular Weight (calculated)

40932.0 Da

IEP (calculated)

9.180

GRAVY (calculated)

-0.225

Length

377 amino acids

Sequence
(BLAST)

001: MLPSRKTKRD FYSAGAGDCI FAPVRKRRRS VSSSPISSAP ETKAGSDLLD SIPEDLVVSI LRRLASTSRS PADFINVLMT CKRLNSLATS PLVLSRLSRK
101: AFAVKAQNWS EAAHRFLKRC VDAGNLEACY TLGMIRFYCL QNRRNGASLM AKAAIRSHAP SLYSVAVIQF NGSGGSKNDK DLRAGVALCA RAAFLGHVDA
201: LRELGHCLQD GYGDPQNVSE GRRCLVKANA RELAAVLSSG VKSHRSWLAL SQPQISNPNQ SHGCPLLSDF GCNVPAPETH PANKFLADWF AVRGVDSLGD
301: GLRLCSHGGC GRPETRKHEF RRCSVCGVVN YCSRACQALD WKLRHKVDCV PMEQDAAYDG EGNVQIDGDN VLVVPLS

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.