Factsheet for TraesCS2B01G299700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G069440.2	Barley	nucleus	93.77	94.26
TraesCS2D01G281100.1	Wheat	nucleus	97.4	89.29
TraesCS2A01G282300.1	Wheat	nucleus	96.1	88.1
Zm00001d025218_P001	Maize	nucleus	73.77	76.14
Os04t0385600-01	Rice	nucleus	77.66	75.7
OQU81347	Sorghum	mitochondrion, nucleus	77.66	72.75
Zm00001d003993_P001	Maize	mitochondrion, nucleus	72.47	70.28
GSMUA_Achr5P25110_001	Banana	nucleus	54.81	57.03
CDX91552	Canola	cytosol, nucleus, plastid	41.3	56.79
CDY12640	Canola	nucleus, plastid	50.65	56.52
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	49.09	56.25
CDY16365	Canola	cytosol, nucleus, plastid	44.94	56.17
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.03	55.47
KRG97416	Soybean	nucleus	50.13	55.46
VIT_01s0010g03630.t01	Wine grape	nucleus	55.06	55.06
Bra004092.1-P	Field mustard	mitochondrion	52.47	55.04
CDY07427	Canola	mitochondrion	52.47	55.04
Solyc05g015420.2.1	Tomato	mitochondrion	55.06	54.92
Bra022516.1-P	Field mustard	cytosol	47.27	54.82
KRH31482	Soybean	mitochondrion	51.43	54.7
PGSC0003DMT400074839	Potato	nucleus	53.25	54.67
CDY51342	Canola	nucleus	48.83	54.65
TraesCS3B01G467900.1	Wheat	nucleus	54.29	54.57
CDY28891	Canola	mitochondrion, plastid	52.21	54.47
KRH63766	Soybean	cytosol, nucleus, plastid	48.31	54.07
GSMUA_Achr11P...	Banana	nucleus	49.61	53.8
Bra004220.1-P	Field mustard	nucleus	51.95	53.76
CDY70354	Canola	cytosol	51.95	53.76
CDY01803	Canola	mitochondrion, plastid	52.21	53.74
KRH54183	Soybean	cytosol, nucleus, plastid	47.79	52.87
Bra034004.1-P	Field mustard	nucleus, plastid	51.69	52.79
AT1G67340.1	Thale cress	mitochondrion, plastid	50.65	51.45
KRH42672	Soybean	mitochondrion	52.21	51.41
KRH58771	Soybean	mitochondrion	52.47	51.27
GSMUA_Achr8P00700_001	Banana	plastid	52.47	46.22
Os05t0388151-00	Rice	nucleus	17.14	35.11

Protein Annotations

EnsemblPlants:TraesCS2B01G299700.1	EnsemblPlantsGene:TraesCS2B01G299700	Gene3D:1.25.40.10	Gene3D:3.30.60.180	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR002893	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	InterPro:Znf_MYND
PANTHER:PTHR12298	PANTHER:PTHR12298:SF29	PFAM:PF01753	PFscan:PS50865	SEG:seg	SUPFAM:SSF144232
SUPFAM:SSF81383	SUPFAM:SSF81901	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr2B:+:420202840..420204210

Molecular Weight (calculated)

40399.4 Da

IEP (calculated)

8.747

GRAVY (calculated)

-0.063

Length

385 amino acids

Sequence
(BLAST)

001: MKTRRGACYS CHESAAAEAP EMHRRKRRRT AMEAAGCAAV GDMFEDLPDD LLVSILADVA ASARSPADLA GAIMTCKRFR ELGQSKVVLA KVSPRCLAVR
101: AKSWSDSAHR FLQGCADAGN LDACYLLGMI RFYCLGSRGS GAALMAAAAV GGHREALYSL AVIQFNGSGG SKDDRDLRAG AALCARAASL GHVDALRELG
201: HCLQDGYGVR RSLLDGRRLL IQANARELAA AVTTSASLLR AAAGSGKASR RHSCLLSDFG CRAAAAAAGE AHAANRFLVE WFALRPLGAE SSPAPAPAPA
301: EEGGGLRLCS HALCGRPETR RHEFRRCSVC GVVNYCSRAC QALHWKMAHK AECTPMDRWL DGANANPNPN AVAGAGDAAV AAPAL

Best Arabidopsis Sequence Match ( AT5G50450.1 )
(BLAST)

001: MTHLNKKQRL ENNHNNTVNN HFEDLHDDLI ISILRKLATS ASSPSDFLTV LSTCKRLNRL GLHPLVLSKA GTQTLAVTAE KWSDSSHKFL KLCVNAGNID
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER

Arabidopsis Description

F-box protein At5g50450 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK27]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.