Factsheet for Solyc05g015420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074839	Potato	nucleus	87.05	89.6
VIT_01s0010g03630.t01	Wine grape	nucleus	73.06	73.25
GSMUA_Achr9P29380_001	Banana	mitochondrion	57.25	66.97
CDY70354	Canola	cytosol	63.99	66.4
Bra004220.1-P	Field mustard	nucleus	63.99	66.4
CDY12640	Canola	nucleus, plastid	59.07	66.09
CDY01803	Canola	mitochondrion, plastid	63.99	66.04
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	59.84	65.62
CDY28891	Canola	mitochondrion, plastid	62.44	65.31
CDY07427	Canola	mitochondrion	61.92	65.12
Bra004092.1-P	Field mustard	mitochondrion	61.66	64.85
GSMUA_Achr9P01480_001	Banana	nucleus	57.77	64.45
GSMUA_Achr8P17530_001	Banana	mitochondrion	59.59	64.43
Bra034004.1-P	Field mustard	nucleus, plastid	62.18	63.66
CDY51342	Canola	nucleus	56.48	63.37
AT1G67340.1	Thale cress	mitochondrion, plastid	62.18	63.32
GSMUA_Achr5P25110_001	Banana	nucleus	55.44	57.84
HORVU2Hr1G069440.2	Barley	nucleus	54.66	55.09
TraesCS2B01G299700.1	Wheat	nucleus	54.92	55.06
GSMUA_Achr11P...	Banana	nucleus	50.52	54.93
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	54.92	54.64
TraesCS3B01G467900.1	Wheat	nucleus	54.15	54.57
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.85	54.4
TraesCS3D01G425300.1	Wheat	nucleus	53.89	54.17
TraesCS3A01G429900.1	Wheat	nucleus	53.63	54.05
Zm00001d025218_P001	Maize	nucleus	52.07	53.89
KXG34006	Sorghum	nucleus	54.66	53.55
Zm00001d012016_P001	Maize	nucleus	52.85	53.4
Zm00001d042328_P001	Maize	nucleus	53.89	53.33
Zm00001d003993_P001	Maize	mitochondrion, nucleus	54.4	52.9
Os04t0385600-01	Rice	nucleus	53.89	52.66
TraesCS2D01G281100.1	Wheat	nucleus	55.7	51.19
TraesCS2A01G282300.1	Wheat	nucleus	55.44	50.95
OQU81347	Sorghum	mitochondrion, nucleus	53.63	50.37
HORVU3Hr1G094600.2	Barley	plastid	53.37	49.88
GSMUA_Achr9P07210_001	Banana	nucleus	38.34	48.52
EES09728	Sorghum	cytosol, nucleus, plastid	41.71	48.06
HORVU2Hr1G081910.1	Barley	mitochondrion	24.61	47.5
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	27.98	47.37
Zm00001d049186_P001	Maize	mitochondrion	39.9	46.95
GSMUA_Achr8P00700_001	Banana	plastid	53.11	46.91
HORVU4Hr1G080860.1	Barley	mitochondrion	24.61	46.8
Os11t0488900-00	Rice	mitochondrion	43.26	46.65
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	44.04	44.85
Zm00001d016505_P001	Maize	mitochondrion	33.94	34.75
KXG30224	Sorghum	mitochondrion	26.42	33.12
Os05t0388151-00	Rice	nucleus	14.77	30.32

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR002893
InterPro:IPR011990	UniProt:K4BYQ8	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37
SUPFAM:SSF144232	SUPFAM:SSF81383	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc05g015420.2	EnsemblPlants:Solyc05g015420.2.1	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002766A86	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:10484003..10485747

Molecular Weight (calculated)

41902.9 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.368

Length

386 amino acids

Sequence
(BLAST)

001: MRTRRGFCYP NPKVNMCREN KIVKRRRDDF PGVGDHRKRS RLSPGVTGHH PDLFDSLPDD LVVSILCKLT SSAASPADFV NVLITCKRLN GLGCHSLVLS
101: KASQKMLTVK AQNWSDSAQR FLKQCADAGN VEACYTLGMI RFYCLQNRGS GASLMAKAAI SSHAPSLYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL
201: GHIDALRELG HCLQDGYGVK QNIAEGRRFL VQANARELAA VLSMTPSALT AGGWLTWNPL PHHRHGAGSG CPLLSDFGCN VPAPEAHPAN QFLTEWFASK
301: GGVPGSGLRL CSHAGCGRPE SRRHEFRRCS VCGTVNYCSR ACQALDWKMR HKAECTPVER WIDEDGENDG NGNGEMGEEG QNMGES

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.