Factsheet for Zm00001d049186_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09728	Sorghum	cytosol, nucleus, plastid	79.88	78.21
Os11t0488900-00	Rice	mitochondrion	67.38	61.73
Zm00001d012016_P001	Maize	nucleus	53.66	46.07
CDY16365	Canola	cytosol, nucleus, plastid	42.99	45.78
Zm00001d042328_P001	Maize	nucleus	54.27	45.64
Zm00001d025218_P001	Maize	nucleus	51.83	45.58
CDX91552	Canola	cytosol, nucleus, plastid	38.41	45.0
KRG97416	Soybean	nucleus	46.95	44.25
Bra022516.1-P	Field mustard	cytosol	44.51	43.98
Zm00001d003993_P001	Maize	mitochondrion, nucleus	52.74	43.58
GSMUA_Achr5P25110_001	Banana	nucleus	48.78	43.24
CDY12640	Canola	nucleus, plastid	45.43	43.19
KRH31482	Soybean	mitochondrion	47.56	43.09
GSMUA_Achr11P...	Banana	nucleus	46.34	42.82
CDY51342	Canola	nucleus	44.21	42.15
VIT_01s0010g03630.t01	Wine grape	nucleus	49.39	42.08
AT1G67340.1	Thale cress	mitochondrion, plastid	48.48	41.95
CDY07427	Canola	mitochondrion	46.65	41.69
Bra004092.1-P	Field mustard	mitochondrion	46.65	41.69
CDY28891	Canola	mitochondrion, plastid	46.65	41.46
CDY70354	Canola	cytosol	46.95	41.4
Bra004220.1-P	Field mustard	nucleus	46.95	41.4
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	42.38	41.37
CDY01803	Canola	mitochondrion, plastid	46.95	41.18
KRH42672	Soybean	mitochondrion	48.78	40.92
Bra034004.1-P	Field mustard	nucleus, plastid	46.34	40.32
PGSC0003DMT400074839	Potato	nucleus	45.73	40.0
Solyc05g015420.2.1	Tomato	mitochondrion	46.95	39.9
KRH63766	Soybean	cytosol, nucleus, plastid	41.46	39.53
KRH58771	Soybean	mitochondrion	47.26	39.34
KRH54183	Soybean	cytosol, nucleus, plastid	41.46	39.08
GSMUA_Achr8P00700_001	Banana	plastid	47.87	35.93
Zm00001d016505_P001	Maize	mitochondrion	34.45	29.97

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100286055	Gene3D:3.30.60.180	MapMan:35.1	ProteinID:AQK49784.1	UniProt:B6TS82
EMBL:EU967847	EMBL:EU975372	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002893
InterPro:IPR011990	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF29	SUPFAM:SSF144232
SUPFAM:SSF81901	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000182D3BB	EnsemblPlantsGene:Zm00001d049186	EnsemblPlants:Zm00001d049186_P001
EnsemblPlants:Zm00001d049186_T001	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

MYND finger family protein

Coordinates

chr4:+:19702785..19704288

Molecular Weight (calculated)

34477.2 Da

IEP (calculated)

10.156

GRAVY (calculated)

-0.102

Length

328 amino acids

Sequence
(BLAST)

001: MRKPTRRRGT SAKGSSGGGI SKAATLPAKQ MVLSGYRGTV DAFDCLPDDL VLAVLAGIAA RARCPADLAA AALPCRRFRD LAAHPAVLSR ASAAAVAVPA
101: GRWSDAAHRF LRRCAASGNL HACYLLGMVL FYCIGGRATG AALLARSAAG GHAAALYALA VVQFNGSGGD KADKDPRAGV ALCARAAWLG HVPALRELGH
201: CLQDGYGARR AAATGRYFLL HAAARELVSS HCRNGEDDAA SRFMVEWWAL PSKTGAQGDG NDADADARLC SHPRCGRRET RRHEFRQCSA CGSAIYCSRA
301: CQALHWKRAH RSQCAAAASR WLAAGNAQ

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.