Factsheet for Zm00001d016505_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30224	Sorghum	mitochondrion	50.66	62.01
CDX91552	Canola	cytosol, nucleus, plastid	28.38	38.21
Zm00001d025218_P001	Maize	nucleus	37.67	38.07
Bra022516.1-P	Field mustard	cytosol	32.63	37.05
CDY16365	Canola	cytosol, nucleus, plastid	30.24	37.01
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	36.34	36.15
KRG97416	Soybean	nucleus	33.16	35.92
Zm00001d003993_P001	Maize	mitochondrion, nucleus	37.67	35.77
VIT_01s0010g03630.t01	Wine grape	nucleus	36.34	35.58
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	31.3	35.12
GSMUA_Achr5P25110_001	Banana	nucleus	33.95	34.59
Zm00001d012016_P001	Maize	nucleus	35.01	34.55
KRH31482	Soybean	mitochondrion	33.16	34.53
Zm00001d049186_P001	Maize	mitochondrion	29.97	34.45
PGSC0003DMT400074839	Potato	nucleus	34.22	34.4
GSMUA_Achr11P...	Banana	nucleus	32.36	34.37
AT1G67340.1	Thale cress	mitochondrion, plastid	34.48	34.3
Solyc05g015420.2.1	Tomato	mitochondrion	34.75	33.94
CDY07427	Canola	mitochondrion	32.89	33.79
CDY01803	Canola	mitochondrion, plastid	33.42	33.69
CDY70354	Canola	cytosol	33.16	33.6
Bra004092.1-P	Field mustard	mitochondrion	32.63	33.52
Bra004220.1-P	Field mustard	nucleus	32.89	33.33
Zm00001d042328_P001	Maize	nucleus	34.48	33.33
KRH63766	Soybean	cytosol, nucleus, plastid	30.24	33.14
CDY12640	Canola	nucleus, plastid	30.24	33.04
KRH58771	Soybean	mitochondrion	34.48	32.99
KRH42672	Soybean	mitochondrion	34.22	32.99
CDY28891	Canola	mitochondrion, plastid	32.1	32.79
Bra034004.1-P	Field mustard	nucleus, plastid	32.63	32.63
CDY51342	Canola	nucleus	29.71	32.56
KRH54183	Soybean	cytosol, nucleus, plastid	29.44	31.9
GSMUA_Achr8P00700_001	Banana	plastid	31.3	27.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103627164	Gene3D:3.30.60.180	MapMan:35.1	UniProt:A0A1D6H8A4	ProteinID:AQK70961.1
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002893	InterPro:IPR011990
PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232	SUPFAM:SSF81383
SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000182AF48	EnsemblPlantsGene:Zm00001d016505	EnsemblPlants:Zm00001d016505_P001	EnsemblPlants:Zm00001d016505_T001
InterPro:Znf_MYND	SEG:seg	:	:	:	:

Description

F-box protein

Coordinates

chr5:-:165226704..165228471

Molecular Weight (calculated)

40789.2 Da

IEP (calculated)

8.539

GRAVY (calculated)

0.065

Length

377 amino acids

Sequence
(BLAST)

001: MVSLCLQAKR PRVGAAPRVV ANQMGAFEVL PQELILSVLT ALSSAADKPA DLFNVMLVCQ EFCRLVTNPQ VIRAASAACV SVLPRRWCAA ADRFLRFCGD
101: NGNADANFFL GMIQFYCLGL QTHGWSRMLM AVRSGHAHAA FAAAVVYYNG SCIDHNQRQP LAAANLFALA ACRGHMGALR DLAFCVSNGL GVRQDAEAGR
201: RLTFTANLRE FRATYPTAAE QAVAYAHVVG NPGCLTSELG CFTTVPASLR GWAHPANRFL CDWFSANPLP FPPRRLLLMC SMPTCGRPET RGLEYRRCPV
301: CGIARYCSRS CQSLHWRMGH TRECVPTHQW LMEAIANHAV VNADDGANAA AMPAVNNNSA THHNNLGGAA ADAPAPK

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.