Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0001g14860.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G67340.1 | VIT_18s0001g14860.t01 | AT5G42190.1 | 12169662 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97416 | Soybean | nucleus | 66.23 | 73.28 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 73.25 | 73.06 |
| PGSC0003DMT400074839 | Potato | nucleus | 69.87 | 71.73 |
| KRH31482 | Soybean | mitochondrion | 66.49 | 70.72 |
| KRH42672 | Soybean | mitochondrion | 69.09 | 68.03 |
| KRH58771 | Soybean | mitochondrion | 68.83 | 67.26 |
| GSMUA_Achr9P29380_001 | Banana | mitochondrion | 56.88 | 66.36 |
| GSMUA_Achr8P17530_001 | Banana | mitochondrion | 60.78 | 65.55 |
| CDY28891 | Canola | mitochondrion, plastid | 62.6 | 65.31 |
| CDY07427 | Canola | mitochondrion | 62.08 | 65.12 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 58.18 | 65.12 |
| GSMUA_Achr6P06430_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 59.48 | 65.06 |
| CDY70354 | Canola | cytosol | 62.86 | 65.05 |
| Bra004220.1-P | Field mustard | nucleus | 62.86 | 65.05 |
| Bra004092.1-P | Field mustard | mitochondrion | 61.82 | 64.85 |
| CDY01803 | Canola | mitochondrion, plastid | 62.86 | 64.71 |
| GSMUA_Achr9P01480_001 | Banana | nucleus | 57.66 | 64.16 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 63.12 | 64.12 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 50.91 | 63.64 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 46.23 | 63.57 |
| CDY12640 | Canola | nucleus, plastid | 56.88 | 63.48 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 56.62 | 62.64 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 61.04 | 62.33 |
| CDY51342 | Canola | nucleus | 55.06 | 61.63 |
| Bra022516.1-P | Field mustard | cytosol | 52.99 | 61.45 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 52.21 | 59.82 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 56.36 | 58.65 |
| GSMUA_Achr11P... | Banana | nucleus | 53.51 | 58.03 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 56.1 | 55.67 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 55.06 | 55.06 |
| Zm00001d025218_P001 | Maize | nucleus | 52.99 | 54.69 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 54.29 | 54.57 |
| Zm00001d042328_P001 | Maize | nucleus | 55.06 | 54.36 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 55.58 | 53.9 |
| Os04t0385600-01 | Rice | nucleus | 55.06 | 53.67 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 53.25 | 53.39 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 52.99 | 53.26 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 52.99 | 53.26 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 51.69 | 53.07 |
| KXG34006 | Sorghum | nucleus | 54.29 | 53.05 |
| Zm00001d012016_P001 | Maize | nucleus | 51.95 | 52.36 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 54.81 | 51.34 |
| GSMUA_Achr9P07210_001 | Banana | nucleus | 40.52 | 51.15 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 55.06 | 50.48 |
| HORVU3Hr1G094600.2 | Barley | plastid | 54.03 | 50.36 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 54.81 | 50.24 |
| EES09728 | Sorghum | cytosol, nucleus, plastid | 43.64 | 50.15 |
| Os11t0488900-00 | Rice | mitochondrion | 45.97 | 49.44 |
| Zm00001d049186_P001 | Maize | mitochondrion | 42.08 | 49.39 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 54.03 | 47.6 |
| HORVU2Hr1G081910.1 | Barley | mitochondrion | 24.68 | 47.5 |
| HORVU1Hr1G007300.2 | Barley | cytosol, mitochondrion, peroxisome | 27.79 | 46.93 |
| HORVU4Hr1G080860.1 | Barley | mitochondrion | 24.68 | 46.8 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 45.71 | 46.44 |
| Zm00001d016505_P001 | Maize | mitochondrion | 35.58 | 36.34 |
| KXG30224 | Sorghum | mitochondrion | 28.05 | 35.06 |
| Os05t0388151-00 | Rice | nucleus | 15.32 | 31.38 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100260936 | wikigene:100260936 | Gene3D:3.30.60.180 | MapMan:35.1 | ProteinID:CCB51299 |
| ProteinID:CCB51299.1 | InterPro:F-box-like_dom_sf | UniProt:F6HGA6 | EMBL:FN595754 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 | EntrezGene:LOC100260936 | wikigene:LOC100260936 | PFAM:PF01753 |
| PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF37 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 |
| TIGR:TC54318 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001982B53 | ArrayExpress:VIT_01s0010g03630 | EnsemblPlantsGene:VIT_01s0010g03630 | EnsemblPlants:VIT_01s0010g03630.t01 |
| unigene:Vvi.19152 | RefSeq:XP_002271442 | RefSeq:XP_002271442.1 | InterPro:Znf_MYND | SEG:seg | : |
Description
No Description!
Coordinates
chr1:+:20997839..20999698
Molecular Weight (calculated)
41584.8 Da
IEP (calculated)
8.724
GRAVY (calculated)
-0.083
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRRGVCYR EVDMCTDNRV VKRRGDFSGD NVVCCRKRQR LAPESAGKSD FFEALPDDLV ICILSKLSSS AGCPSDFINV LLTCKRFNGL GLHSLVLSRA
101: SSKSLAVRAK NWSESALRFL KLCADAGNVE ACYTLGMIRF YCLQNRVSGA SLMAKAAISS HAPALYSLAV IQFNGSVGSK NDKDLRAGVA LCARAAFLGH
201: IDALRELGHC LQDGYGVRQN VAEGRRFLVQ ANARELAAVL SSASSAVSSR SWLTWNPHQH HRHVTGSGCP LLSDFGCNVP APEAHPASRF LAEWFAARGG
301: VPGPGLRLCS HAGCGRPEMR RHEFRRCSVC GIVNYCSRAC QALDWKLRHK AACAPVERWL VDDGDANGEG AVAGAAAEDD VIVAS
101: SSKSLAVRAK NWSESALRFL KLCADAGNVE ACYTLGMIRF YCLQNRVSGA SLMAKAAISS HAPALYSLAV IQFNGSVGSK NDKDLRAGVA LCARAAFLGH
201: IDALRELGHC LQDGYGVRQN VAEGRRFLVQ ANARELAAVL SSASSAVSSR SWLTWNPHQH HRHVTGSGCP LLSDFGCNVP APEAHPASRF LAEWFAARGG
301: VPGPGLRLCS HAGCGRPEMR RHEFRRCSVC GIVNYCSRAC QALDWKLRHK AACAPVERWL VDDGDANGEG AVAGAAAEDD VIVAS
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]
SUBAcon: [plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.