Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G069440.2 | Barley | nucleus | 76.96 | 79.37 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 75.7 | 77.66 |
| Zm00001d025218_P001 | Maize | nucleus | 72.15 | 76.41 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 78.23 | 75.18 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 75.19 | 74.81 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 76.46 | 71.9 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 75.44 | 70.95 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 57.22 | 59.63 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 55.7 | 56.7 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 52.66 | 56.22 |
| CDY12640 | Canola | nucleus, plastid | 48.86 | 55.94 |
| GSMUA_Achr11P... | Banana | nucleus | 50.13 | 55.77 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 39.49 | 55.71 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 43.29 | 55.52 |
| CDY51342 | Canola | nucleus | 48.1 | 55.23 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 53.67 | 55.06 |
| KRH31482 | Soybean | mitochondrion | 50.13 | 54.7 |
| KRG97416 | Soybean | nucleus | 48.1 | 54.6 |
| CDY07427 | Canola | mitochondrion | 50.63 | 54.5 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 46.33 | 54.46 |
| Bra022516.1-P | Field mustard | cytosol | 45.57 | 54.22 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 52.66 | 53.89 |
| Bra004220.1-P | Field mustard | nucleus | 50.63 | 53.76 |
| CDY70354 | Canola | cytosol | 50.63 | 53.76 |
| CDY01803 | Canola | mitochondrion, plastid | 50.89 | 53.74 |
| Bra004092.1-P | Field mustard | mitochondrion | 49.37 | 53.13 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 50.89 | 53.03 |
| CDY28891 | Canola | mitochondrion, plastid | 49.37 | 52.85 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 50.38 | 52.79 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 45.82 | 52.62 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 46.33 | 52.59 |
| PGSC0003DMT400074839 | Potato | nucleus | 49.87 | 52.53 |
| Os11t0488900-00 | Rice | mitochondrion | 47.34 | 52.23 |
| KRH42672 | Soybean | mitochondrion | 50.13 | 50.64 |
| KRH58771 | Soybean | mitochondrion | 50.13 | 50.25 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 50.38 | 45.54 |
| Os05t0388151-00 | Rice | nucleus | 17.47 | 36.7 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | EntrezGene:4335651 | ProteinID:BAF14532.1 | ProteinID:BAS88923.1 |
| ProteinID:CAE05014.1 | ProteinID:CAE05298.2 | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002893 | InterPro:IPR011990 | EnsemblPlantsGene:Os04g0385600 | EnsemblPlants:Os04t0385600-01 | PFAM:PF01753 | PFscan:PS50865 |
| PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 | UniProt:Q7XL60 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI00001B1B80 | RefSeq:XP_015634298.1 | InterPro:Znf_MYND | SEG:seg | : |
Description
Os_F0796Tetratricopeptide-like helical domain containing protein. (Os04t0385600-01)
Coordinates
chr4:-:18905542..18907154
Molecular Weight (calculated)
40761.5 Da
IEP (calculated)
9.117
GRAVY (calculated)
-0.062
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRRGACYS PASCQDGRRK RRRIAGGGGE GSAAAAAAVA GGAEGPANDM FEELPDDLVV SILADVAASA RSPGDLAGAM LTCKRFRELG QSKVVLARAS
101: PRCLAVRAKA WSDAAHRFLQ RCADAGNLDA CYLLGMIRFY CLGSRGSGAA LMAAAAVGGH REALYSLAVI QFNGSGGSKD DRDLRAGAAL CARAASLGHV
201: DALRELGHCL QDGYGVRRSV LDGRRLLIQA NARELAAAVA ASASLLRAAT GKPAAAASRR HSCLLSDFGC HAAAPKAGGE AHAANRFLVD WFASRPLAGS
301: TAAAAAAPTP GSAAEDEAAG LRLCSHALCG RPETRRHEFR RCSVCGVVNY CSRACQALHW KTAHKAECTP MDRWLDNAAA GAANPNAAAM AAPAP
101: PRCLAVRAKA WSDAAHRFLQ RCADAGNLDA CYLLGMIRFY CLGSRGSGAA LMAAAAVGGH REALYSLAVI QFNGSGGSKD DRDLRAGAAL CARAASLGHV
201: DALRELGHCL QDGYGVRRSV LDGRRLLIQA NARELAAAVA ASASLLRAAT GKPAAAASRR HSCLLSDFGC HAAAPKAGGE AHAANRFLVD WFASRPLAGS
301: TAAAAAAPTP GSAAEDEAAG LRLCSHALCG RPETRRHEFR RCSVCGVVNY CSRACQALHW KTAHKAECTP MDRWLDNAAA GAANPNAAAM AAPAP
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.