Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 3
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G425300.1 | Wheat | nucleus | 78.09 | 78.91 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 77.58 | 78.59 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 77.06 | 78.07 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 74.23 | 76.8 |
| Zm00001d042328_P001 | Maize | nucleus | 77.06 | 76.67 |
| KXG34006 | Sorghum | nucleus | 77.84 | 76.65 |
| Zm00001d012016_P001 | Maize | nucleus | 73.2 | 74.35 |
| HORVU3Hr1G094600.2 | Barley | plastid | 77.32 | 72.64 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 41.24 | 57.14 |
| KRG97416 | Soybean | nucleus | 50.77 | 56.61 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 55.67 | 56.1 |
| KRH31482 | Soybean | mitochondrion | 52.32 | 56.08 |
| Os04t0385600-01 | Rice | nucleus | 56.7 | 55.7 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 44.07 | 55.52 |
| PGSC0003DMT400074839 | Potato | nucleus | 53.35 | 55.2 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 54.64 | 54.92 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 52.32 | 54.86 |
| CDY12640 | Canola | nucleus, plastid | 48.2 | 54.2 |
| CDY07427 | Canola | mitochondrion | 50.52 | 53.41 |
| CDY28891 | Canola | mitochondrion, plastid | 50.77 | 53.39 |
| Bra022516.1-P | Field mustard | cytosol | 45.62 | 53.31 |
| CDY51342 | Canola | nucleus | 47.16 | 53.2 |
| Os11t0488900-00 | Rice | mitochondrion | 48.97 | 53.07 |
| CDY70354 | Canola | cytosol | 50.77 | 52.96 |
| Bra004220.1-P | Field mustard | nucleus | 50.77 | 52.96 |
| Bra004092.1-P | Field mustard | mitochondrion | 50.0 | 52.86 |
| CDY01803 | Canola | mitochondrion, plastid | 50.77 | 52.67 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 45.36 | 52.38 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 51.03 | 52.24 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 50.52 | 51.99 |
| GSMUA_Achr11P... | Banana | nucleus | 47.16 | 51.55 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 46.13 | 51.44 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 45.36 | 51.16 |
| KRH42672 | Soybean | mitochondrion | 51.55 | 51.15 |
| KRH58771 | Soybean | mitochondrion | 51.8 | 51.02 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 46.65 | 47.76 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 50.26 | 44.62 |
| Os05t0388151-00 | Rice | nucleus | 14.43 | 29.79 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | EntrezGene:4327753 | ProteinID:BAB86182.1 | ProteinID:BAS75945.1 |
| InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 |
| EnsemblPlantsGene:Os01g0921800 | EnsemblPlants:Os01t0921800-00 | PFAM:PF01753 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 |
| UniProt:Q8RZI5 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A2A7B |
| RefSeq:XP_015625039.1 | InterPro:Znf_MYND | SEG:seg | : | : | : |
Description
F-box protein 52Tetratricopeptide-like helical domain containing protein. (Os01t0921800-00)
Coordinates
chr1:-:40256826..40258624
Molecular Weight (calculated)
40523.5 Da
IEP (calculated)
9.282
GRAVY (calculated)
-0.110
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRSGSLYR SGGGGGETAM VGQKRKRSSL PPQYATAGDC CGGGGRRKRL AGGGPDYLDE LPDDLVLAVL SKLAASASSP SDLLSVHLTC KRLNGLGRHD
101: MVFAKASPAS LAVKAASWSE PVQRFLKLCA DAGNLEACYI LGMIRFYCLG NRSGGAALLA RAAVGGHAAA LYSLAVIQFN GSGGAKSDRD LRAGAALCAR
201: AAALGHVDAL RELGHCLQDG YGVRRDPAEG RRFLVAANAR ELTLALAAAA SHRPFAALPL AGGAAAGAIG CPLLSDFGWS LPEAEPHPAN LFMADWWASR
301: GVQATAKKPG LEAPAAATGD SDGGGELRLC SHVRCGRRET RRHEFRRCSV CGAANYCSRA CQALDWKRAH KAQCVPMDRW LLAAGEAQ
101: MVFAKASPAS LAVKAASWSE PVQRFLKLCA DAGNLEACYI LGMIRFYCLG NRSGGAALLA RAAVGGHAAA LYSLAVIQFN GSGGAKSDRD LRAGAALCAR
201: AAALGHVDAL RELGHCLQDG YGVRRDPAEG RRFLVAANAR ELTLALAAAA SHRPFAALPL AGGAAAGAIG CPLLSDFGWS LPEAEPHPAN LFMADWWASR
301: GVQATAKKPG LEAPAAATGD SDGGGELRLC SHVRCGRRET RRHEFRRCSV CGAANYCSRA CQALDWKRAH KAQCVPMDRW LLAAGEAQ
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.