Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G425300.1 | Wheat | nucleus | 95.82 | 95.57 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 89.03 | 89.03 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 86.68 | 88.53 |
| HORVU3Hr1G094600.2 | Barley | plastid | 89.82 | 83.29 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 78.59 | 77.58 |
| Zm00001d042328_P001 | Maize | nucleus | 74.67 | 73.33 |
| KXG34006 | Sorghum | nucleus | 74.41 | 72.33 |
| Zm00001d012016_P001 | Maize | nucleus | 72.06 | 72.25 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 40.73 | 55.71 |
| KRG97416 | Soybean | nucleus | 49.87 | 54.89 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 52.74 | 54.59 |
| PGSC0003DMT400074839 | Potato | nucleus | 53.0 | 54.13 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 43.34 | 53.9 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 54.05 | 53.63 |
| KRH31482 | Soybean | mitochondrion | 50.65 | 53.59 |
| CDY12640 | Canola | nucleus, plastid | 47.78 | 53.04 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 53.26 | 52.99 |
| CDY07427 | Canola | mitochondrion | 50.13 | 52.32 |
| CDY28891 | Canola | mitochondrion, plastid | 50.39 | 52.3 |
| Bra004092.1-P | Field mustard | mitochondrion | 49.87 | 52.04 |
| GSMUA_Achr11P... | Banana | nucleus | 48.04 | 51.83 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 51.17 | 51.72 |
| CDY01803 | Canola | mitochondrion, plastid | 50.39 | 51.6 |
| Bra022516.1-P | Field mustard | cytosol | 44.65 | 51.51 |
| CDY51342 | Canola | nucleus | 46.21 | 51.45 |
| Bra004220.1-P | Field mustard | nucleus | 49.87 | 51.34 |
| CDY70354 | Canola | cytosol | 49.87 | 51.34 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 50.39 | 51.19 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 44.65 | 50.89 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 54.57 | 49.76 |
| KRH42672 | Soybean | mitochondrion | 49.61 | 48.59 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 43.6 | 48.55 |
| KRH58771 | Soybean | mitochondrion | 49.87 | 48.48 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 43.86 | 48.28 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 49.09 | 43.02 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G429900.1 | EnsemblPlantsGene:TraesCS3A01G429900 | Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:IPR002893 | InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf | InterPro:Znf_MYND |
| PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 | PFAM:PF01753 | PFscan:PS50865 | SEG:seg | SUPFAM:SSF144232 |
| SUPFAM:SSF81383 | SUPFAM:SSF81901 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:672868647..672870024
Molecular Weight (calculated)
39848.5 Da
IEP (calculated)
9.256
GRAVY (calculated)
-0.110
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTRSGSLYT CGGTGEPAAP VAGQKRKRSP AAAGEASGVR RKRQATGPDY LDGIPDDLVL SIFSKLAASA NSPSDLLSVH LTCKRLNGLG QQDMVFAKAS
101: PASLAVKAAA WSELVQRFLK RCADAGNLEA CYILGMIRFY CLGSRSGGAA LLAKAAVGGH PAALYSLAVI QFNGSGGAKS DRDLRAGAAL CARSAALGHV
201: DALRELGHCL QDGYGVRRDP AEGRRLLVAA NARELSLALA AAAASATYPF ASLPIGAVAG GAGGVTSSPL LSDFGWSLPE AEPHTANQFM SDWWASRGVQ
301: ACAKKTDAAA TGGDGEGELR LCSHMRCGRK ETRRHEFRRC SVCGAANYCS RACQALDWKR AHKAQCVPMD RWLVGGAAAA PQQ
101: PASLAVKAAA WSELVQRFLK RCADAGNLEA CYILGMIRFY CLGSRSGGAA LLAKAAVGGH PAALYSLAVI QFNGSGGAKS DRDLRAGAAL CARSAALGHV
201: DALRELGHCL QDGYGVRRDP AEGRRLLVAA NARELSLALA AAAASATYPF ASLPIGAVAG GAGGVTSSPL LSDFGWSLPE AEPHTANQFM SDWWASRGVQ
301: ACAKKTDAAA TGGDGEGELR LCSHMRCGRK ETRRHEFRRC SVCGAANYCS RACQALDWKR AHKAQCVPMD RWLVGGAAAA PQQ
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.