Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022516.1-P | Field mustard | cytosol | 82.44 | 83.43 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 76.19 | 83.12 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 68.45 | 82.14 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 58.04 | 56.69 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 58.63 | 56.61 |
| GSMUA_Achr9P29380_001 | Banana | mitochondrion | 54.76 | 55.76 |
| GSMUA_Achr9P01480_001 | Banana | nucleus | 56.55 | 54.91 |
| GSMUA_Achr8P17530_001 | Banana | mitochondrion | 58.33 | 54.9 |
| GSMUA_Achr6P06430_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 56.25 | 53.69 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 59.82 | 52.21 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 56.85 | 51.62 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 57.74 | 51.19 |
| GSMUA_Achr11P... | Banana | nucleus | 53.87 | 50.99 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 56.25 | 49.09 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 55.36 | 48.56 |
| Zm00001d025218_P001 | Maize | nucleus | 52.68 | 47.45 |
| Os04t0385600-01 | Rice | nucleus | 54.46 | 46.33 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 52.38 | 45.36 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 51.49 | 45.17 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.3 | 45.07 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 56.25 | 45.0 |
| Zm00001d012016_P001 | Maize | nucleus | 50.89 | 44.76 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 55.95 | 44.76 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 50.89 | 44.65 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 50.89 | 44.53 |
| EES09728 | Sorghum | cytosol, nucleus, plastid | 44.35 | 44.48 |
| Zm00001d042328_P001 | Maize | nucleus | 51.49 | 44.36 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 52.38 | 44.33 |
| GSMUA_Achr9P07210_001 | Banana | nucleus | 40.18 | 44.26 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 53.57 | 43.8 |
| KXG34006 | Sorghum | nucleus | 51.19 | 43.65 |
| Os11t0488900-00 | Rice | mitochondrion | 45.54 | 42.74 |
| Zm00001d049186_P001 | Maize | mitochondrion | 41.37 | 42.38 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 55.06 | 42.33 |
| HORVU3Hr1G094600.2 | Barley | plastid | 51.49 | 41.89 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 46.43 | 41.16 |
| HORVU2Hr1G081910.1 | Barley | mitochondrion | 23.51 | 39.5 |
| HORVU4Hr1G080860.1 | Barley | mitochondrion | 23.81 | 39.41 |
| HORVU1Hr1G007300.2 | Barley | cytosol, mitochondrion, peroxisome | 26.49 | 39.04 |
| Zm00001d016505_P001 | Maize | mitochondrion | 35.12 | 31.3 |
| Os05t0388151-00 | Rice | nucleus | 16.37 | 29.26 |
| KXG30224 | Sorghum | mitochondrion | 25.3 | 27.6 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | EntrezGene:835113 | ProteinID:AED95947.1 | ArrayExpress:AT5G50450 |
| EnsemblPlantsGene:AT5G50450 | RefSeq:AT5G50450 | TAIR:AT5G50450 | RefSeq:AT5G50450-TAIR-G | EnsemblPlants:AT5G50450.1 | TAIR:AT5G50450.1 |
| EMBL:AY099743 | ProteinID:BAB09464.1 | EMBL:BT000275 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046872 | InterPro:IPR002893 | InterPro:IPR011990 | RefSeq:NP_199856.1 | PFAM:PF01753 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF37 | UniProt:Q9FK27 |
| SUPFAM:SSF144232 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000AC523 | InterPro:Znf_MYND | SEG:seg |
Description
F-box protein At5g50450 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK27]
Coordinates
chr5:-:20543225..20544857
Molecular Weight (calculated)
36813.8 Da
IEP (calculated)
8.004
GRAVY (calculated)
-0.268
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHLNKKQRL ENNHNNTVNN HFEDLHDDLI ISILRKLATS ASSPSDFLTV LSTCKRLNRL GLHPLVLSKA GTQTLAVTAE KWSDSSHKFL KLCVNAGNID
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.