CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016505_P001	Maize	mitochondrion	62.01	50.66
EES09728	Sorghum	cytosol, nucleus, plastid	31.17	28.66
VIT_01s0010g03630.t01	Wine grape	nucleus	35.06	28.05
KRG97416	Soybean	nucleus	31.49	27.87
CDX91552	Canola	cytosol, nucleus, plastid	25.0	27.5
Bra022516.1-P	Field mustard	cytosol	29.55	27.41
KRH31482	Soybean	mitochondrion	32.14	27.35
CDY16365	Canola	cytosol, nucleus, plastid	26.95	26.95
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	33.12	26.91
GSMUA_Achr5P25110_001	Banana	nucleus	32.14	26.76
Solyc05g015420.2.1	Tomato	mitochondrion	33.12	26.42
PGSC0003DMT400074839	Potato	nucleus	32.14	26.4
KRH63766	Soybean	cytosol, nucleus, plastid	28.9	25.87
KRH42672	Soybean	mitochondrion	32.47	25.58
OQU81347	Sorghum	mitochondrion, nucleus	34.09	25.55
KRH58771	Soybean	mitochondrion	32.47	25.38
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	27.6	25.3
CDY70354	Canola	cytosol	30.52	25.27
Bra004220.1-P	Field mustard	nucleus	30.52	25.27
GSMUA_Achr11P...	Banana	nucleus	28.9	25.07
KRH54183	Soybean	cytosol, nucleus, plastid	28.25	25.0
Bra034004.1-P	Field mustard	nucleus, plastid	30.52	24.93
CDY12640	Canola	nucleus, plastid	27.92	24.93
CDY01803	Canola	mitochondrion, plastid	30.19	24.87
AT1G67340.1	Thale cress	mitochondrion, plastid	30.19	24.54
CDY51342	Canola	nucleus	27.27	24.42
CDY07427	Canola	mitochondrion	28.57	23.98
Bra004092.1-P	Field mustard	mitochondrion	28.57	23.98
KXG34006	Sorghum	nucleus	30.52	23.86
CDY28891	Canola	mitochondrion, plastid	28.57	23.85
GSMUA_Achr8P00700_001	Banana	plastid	30.84	21.74

Protein Annotations

EnsemblPlants:KXG30224	EnsemblPlantsGene:SORBI_3004G147300	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR12298
PANTHER:PTHR12298:SF37	ProteinID:KXG30224	ProteinID:KXG30224.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0007F1D538
UniProt:A0A194YPS5	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:46036107..46048090

Molecular Weight (calculated)

33728.9 Da

IEP (calculated)

8.624

GRAVY (calculated)

0.029

Length

308 amino acids

Sequence
(BLAST)

001: MVSVRRRRLQ ATRARMENQM GAFAVLPQEL ILCVLTALSA SVDKPADLFN QMIDDDDASL STYYCKQFRR LMLNSKVLQA AAAACVSVRP HRLCTAAERF
101: IRLCGDHGNA DANFFLGMIQ FHCFGLWSQG WSHMMMALRS GHAHAAFAIA GPRAAALLFA LAACRGHMGA LRDLAFCVTN GFSMRQDAAA GHRFTFTANL
201: KEFRATYLME PEMAVAYAHV LNNPGCLTSE LGCFTTVPAS LQGWAHPANR FLCEWFAAHP QLLPPARLPP MCSFPTCGRP ETRRLHRSST EHNNLGGGAG
301: AAPDAPPM

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.