CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDY01389
CDY13521
CDY16470
CDY29370
CDY39073
CDY40610
CDY40611
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67340.1	CDY01389	AT1G20140.1	12169662
AT1G67340.1	CDY29370	AT1G20140.1	12169662
AT1G67340.1	CDY43408	AT1G20140.1	12169662
AT1G67340.1	CDY44209	AT1G20140.1	12169662
AT1G67340.1	CDY63159	AT1G20140.1	12169662
AT1G67340.1	CDY67544	AT1G20140.1	12169662
AT1G67340.1	CDY68971	AT1G20140.1	12169662
AT1G67340.1	CDX68112	AT1G75950.1	12169662
AT1G67340.1	CDX73212	AT1G75950.1	12169662
AT1G67340.1	CDX80590	AT1G75950.1	12169662
AT1G67340.1	CDX85931	AT1G75950.1	12169662
AT1G67340.1	CDX87650	AT1G75950.1	12169662
AT1G67340.1	CDY13521	AT1G75950.1	12169662
AT1G67340.1	CDY39073	AT1G75950.1	12169662
AT1G67340.1	CDX77280	AT3G60010.1	12169662
AT1G67340.1	CDX93698	AT3G60010.1	12169662
AT1G67340.1	CDX93699	AT3G60010.1	12169662
AT1G67340.1	CDY16470	AT3G60010.1	12169662
AT1G67340.1	CDY40610	AT3G60010.1	12169662
AT1G67340.1	CDY40611	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07427	Canola	mitochondrion	91.06	91.55
CDY70354	Canola	cytosol	81.57	80.91
CDY01803	Canola	mitochondrion, plastid	81.3	80.21
CDY12640	Canola	nucleus, plastid	72.09	77.1
CDY51342	Canola	nucleus	70.73	75.87
AT1G67340.1	Thale cress	mitochondrion, plastid	77.24	75.2
PGSC0003DMT400074839	Potato	nucleus	65.04	64.0
VIT_01s0010g03630.t01	Wine grape	nucleus	65.31	62.6
Solyc05g015420.2.1	Tomato	mitochondrion	65.31	62.44
GSMUA_Achr8P17530_001	Banana	mitochondrion	59.89	61.9
CDX91552	Canola	cytosol, nucleus, plastid	46.88	61.79
CDY16365	Canola	cytosol, nucleus, plastid	50.41	60.39
GSMUA_Achr9P29380_001	Banana	mitochondrion	53.93	60.3
GSMUA_Achr9P01480_001	Banana	nucleus	56.37	60.12
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	56.64	59.38
GSMUA_Achr5P25110_001	Banana	nucleus	55.56	55.41
GSMUA_Achr11P...	Banana	nucleus	50.68	52.68
TraesCS2B01G299700.1	Wheat	nucleus	54.47	52.21
Zm00001d012016_P001	Maize	nucleus	53.93	52.09
HORVU2Hr1G069440.2	Barley	nucleus	53.66	51.7
Zm00001d025218_P001	Maize	nucleus	51.49	50.94
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	53.39	50.77
TraesCS3B01G467900.1	Wheat	nucleus	52.3	50.39
TraesCS3A01G429900.1	Wheat	nucleus	52.3	50.39
TraesCS3D01G425300.1	Wheat	nucleus	52.3	50.26
KXG34006	Sorghum	nucleus	53.39	50.0
Zm00001d042328_P001	Maize	nucleus	52.85	50.0
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.68	49.87
Zm00001d003993_P001	Maize	mitochondrion, nucleus	53.39	49.62
Os04t0385600-01	Rice	nucleus	52.85	49.37
TraesCS2D01G281100.1	Wheat	nucleus	54.47	47.86
OQU81347	Sorghum	mitochondrion, nucleus	53.12	47.69
TraesCS2A01G282300.1	Wheat	nucleus	53.66	47.14
HORVU3Hr1G094600.2	Barley	plastid	52.57	46.97
Os11t0488900-00	Rice	mitochondrion	45.26	46.65
Zm00001d049186_P001	Maize	mitochondrion	41.46	46.65
EES09728	Sorghum	cytosol, nucleus, plastid	42.28	46.57
GSMUA_Achr9P07210_001	Banana	nucleus	37.94	45.9
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	28.18	45.61
HORVU4Hr1G080860.1	Barley	mitochondrion	24.66	44.83
GSMUA_Achr8P00700_001	Banana	plastid	52.3	44.16
HORVU2Hr1G081910.1	Barley	mitochondrion	23.85	44.0
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	44.44	43.27
Zm00001d016505_P001	Maize	mitochondrion	32.79	32.1
Os05t0388151-00	Rice	nucleus	16.26	31.91
KXG30224	Sorghum	mitochondrion	23.85	28.57

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	UniProt:A0A078GTP6	EnsemblPlants:CDY28891	ProteinID:CDY28891
ProteinID:CDY28891.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00041580001
InterPro:IPR002893	InterPro:IPR011990	PFAM:PF01753	ScanProsite:PS01360	PFscan:PS50865	PANTHER:PTHR12298
PANTHER:PTHR12298:SF37	SUPFAM:SSF144232	SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDEF91
InterPro:Znf_MYND	SEG:seg	:	:	:	:

Description

BnaC06g26790DBnaC06g26790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTP6]

Coordinates

chrLK032227:-:429559..431126

Molecular Weight (calculated)

39846.8 Da

IEP (calculated)

8.991

GRAVY (calculated)

-0.182

Length

369 amino acids

Sequence
(BLAST)

001: MLPVRQTKRV FYSAGVFTPA RKRRRCVSSP ISPAPETNTG PNLLDSIPDD LVVSILCKLA STSRCPADFI SVSMTCKRLN TLATCPYVLS RLSRKAIAIK
101: AQNWSESAHR FLKRSADAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI NSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP RNVSEGRRFL VQANARELAA VLSSGIEARS WLTLSQPQTH GCPLLSDFGC NVPAPETHPA NRFLADWFAL RGGDSPGDGL RLCSHGGCRR
301: PEIRKHEFRR CSVCGVVNYC SRACQALDWK LRHKMDCAPA EQGAAGDGEG NVQIEGNVNG DNVPVVPMS

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.