Factsheet for GSMUA_Achr6P06430_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P29380_001	Banana	mitochondrion	72.44	77.27
GSMUA_Achr9P01480_001	Banana	nucleus	75.85	77.17
GSMUA_Achr8P17530_001	Banana	mitochondrion	69.32	68.35
KRG97416	Soybean	nucleus	61.65	62.36
CDX91552	Canola	cytosol, nucleus, plastid	48.86	61.43
CDY16365	Canola	cytosol, nucleus, plastid	53.12	60.71
Solyc05g015420.2.1	Tomato	mitochondrion	65.62	59.84
KRH31482	Soybean	mitochondrion	61.36	59.67
VIT_01s0010g03630.t01	Wine grape	nucleus	65.06	59.48
Bra022516.1-P	Field mustard	cytosol	55.4	58.73
PGSC0003DMT400074839	Potato	nucleus	62.5	58.67
CDY28891	Canola	mitochondrion, plastid	59.38	56.64
CDY12640	Canola	nucleus, plastid	55.4	56.52
GSMUA_Achr5P25110_001	Banana	nucleus	59.38	56.49
CDY07427	Canola	mitochondrion	58.81	56.4
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	53.69	56.25
Bra004092.1-P	Field mustard	mitochondrion	58.24	55.86
GSMUA_Achr11P...	Banana	nucleus	56.25	55.77
KRH42672	Soybean	mitochondrion	61.93	55.75
CDY70354	Canola	cytosol	58.81	55.65
CDY01803	Canola	mitochondrion, plastid	59.09	55.62
Bra004220.1-P	Field mustard	nucleus	58.52	55.38
KRH58771	Soybean	mitochondrion	61.65	55.08
CDY51342	Canola	nucleus	53.41	54.65
AT1G67340.1	Thale cress	mitochondrion, plastid	58.52	54.35
KRH63766	Soybean	cytosol, nucleus, plastid	52.84	54.07
GSMUA_Achr9P07210_001	Banana	nucleus	46.59	53.77
Bra034004.1-P	Field mustard	nucleus, plastid	57.39	53.58
KRH54183	Soybean	cytosol, nucleus, plastid	52.56	53.16
GSMUA_Achr8P00700_001	Banana	plastid	60.51	48.74

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G06430_001	EnsemblPlants:GSMUA_Achr6P06430_001	EnsemblPlants:GSMUA_Achr6T06430_001	InterPro:IPR002893	InterPro:IPR011990
UniProt:M0T4P1	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232
SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294C5B8	InterPro:Znf_MYND	SEG:seg

Description

F-box protein At1g67340 [Source:GMGC_GENE;Acc:GSMUA_Achr6G06430_001]

Coordinates

chr6:+:4340041..4341374

Molecular Weight (calculated)

38430.4 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.251

Length

352 amino acids

Sequence
(BLAST)

001: MRTRRGVCYP RPQWRAEEPE EEEEEGRRRK RSRRVPAGGA AADEPARMMA SEGVAGEMPD FFDSLPDELV VSILCKLSAS AARPADLVGV RITCKRLNEL
101: GSDPLALAMA SMKSLAVRAK NWSESAHEFL KQCADAGNLE ACYILGMIRF YCLQNRGSGA SLMARAAMGS HAAALYSLAV IQFNGSGGSK DDKDLRAGVA
201: LCARAAVLGH VDALRELGHC LQDGYGVRRN VAEGRRFLIQ ANARELAAAH PANRFMAEWF AARGASGWPR EDGLRLCSHI GCGRREMRRH EFRRCSVCGV
301: VNYCSRACQA LHWKLAHKAE CAPMDRWLDA AAAAGAPPEV GGGEMMMMMM LN

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.