Factsheet for GSMUA_Achr9P01480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	77.17	75.85
GSMUA_Achr9P29380_001	Banana	mitochondrion	72.25	75.76
GSMUA_Achr8P17530_001	Banana	mitochondrion	73.12	70.87
KRG97416	Soybean	nucleus	60.98	60.63
CDY16365	Canola	cytosol, nucleus, plastid	53.76	60.39
CDX91552	Canola	cytosol, nucleus, plastid	48.84	60.36
GSMUA_Achr5P25110_001	Banana	nucleus	63.87	59.73
KRH31482	Soybean	mitochondrion	61.85	59.12
Bra022516.1-P	Field mustard	cytosol	56.07	58.43
Solyc05g015420.2.1	Tomato	mitochondrion	64.45	57.77
GSMUA_Achr11P...	Banana	nucleus	59.25	57.75
VIT_01s0010g03630.t01	Wine grape	nucleus	64.16	57.66
PGSC0003DMT400074839	Potato	nucleus	61.56	56.8
CDY70354	Canola	cytosol	60.98	56.72
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	54.91	56.55
Bra004220.1-P	Field mustard	nucleus	60.69	56.45
CDY01803	Canola	mitochondrion, plastid	60.98	56.42
CDY28891	Canola	mitochondrion, plastid	60.12	56.37
CDY07427	Canola	mitochondrion	59.54	56.13
Bra004092.1-P	Field mustard	mitochondrion	59.54	56.13
CDY12640	Canola	nucleus, plastid	55.78	55.94
KRH63766	Soybean	cytosol, nucleus, plastid	55.49	55.81
CDY51342	Canola	nucleus	54.62	54.94
KRH54183	Soybean	cytosol, nucleus, plastid	55.2	54.89
KRH42672	Soybean	mitochondrion	61.27	54.22
AT1G67340.1	Thale cress	mitochondrion, plastid	59.25	54.09
Bra034004.1-P	Field mustard	nucleus, plastid	58.38	53.58
KRH58771	Soybean	mitochondrion	60.4	53.05
GSMUA_Achr9P07210_001	Banana	nucleus	44.51	50.49
GSMUA_Achr8P00700_001	Banana	plastid	62.14	49.2

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G01480_001	EnsemblPlants:GSMUA_Achr9P01480_001	EnsemblPlants:GSMUA_Achr9T01480_001	InterPro:IPR002893	InterPro:IPR011990
UniProt:M0TWK5	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232
SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296EB8A	InterPro:Znf_MYND	SEG:seg

Description

F-box protein At1g67340 [Source:GMGC_GENE;Acc:GSMUA_Achr9G01480_001]

Coordinates

chr9:+:1107392..1108754

Molecular Weight (calculated)

37235.5 Da

IEP (calculated)

9.139

GRAVY (calculated)

-0.279

Length

346 amino acids

Sequence
(BLAST)

001: MRTRRGFCYR MPQSERQWRA VEEEERSRKR RRRLPAGGGG GADSGGQKMA TEGVAEDVPD LFDGLPDDLV VSILSKVSAS AASPSDLISI MITCKRLKGL
101: GSNPLVLAKA SAQSLAVRAK NWSESAHRFL KRCADAGNLE ACYILGMIRF YCLQNRGSGA SLMARSAMGS HAAALYSLAV IQFNGSGGDK GDKDLHAGVA
201: LCARAAFLGH VDALRELGHC LQDGYGVRRN VAEGRRFLVQ ANARELAAVH PANRFMVEWF AARGASGTGE EGLRLCSHGG CGRQETRRHE FRRCSVCGAV
301: NYCSRACQAL HWKLAHKADC APMDRWLDAA AGAAPPEPAG GELAFN

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.