CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58771	Soybean	mitochondrion	89.26	88.58
KRG97416	Soybean	nucleus	67.77	76.15
KRH31482	Soybean	mitochondrion	69.57	75.14
VIT_01s0010g03630.t01	Wine grape	nucleus	68.03	69.09
GSMUA_Achr8P17530_001	Banana	mitochondrion	57.8	63.31
KRH63766	Soybean	cytosol, nucleus, plastid	54.99	62.5
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	55.75	61.93
GSMUA_Achr9P29380_001	Banana	mitochondrion	52.17	61.82
GSMUA_Achr9P01480_001	Banana	nucleus	54.22	61.27
KRH54183	Soybean	cytosol, nucleus, plastid	53.96	60.63
GSMUA_Achr5P25110_001	Banana	nucleus	52.17	55.14
GSMUA_Achr11P...	Banana	nucleus	48.59	53.52
Zm00001d025218_P001	Maize	nucleus	50.38	52.81
HORVU2Hr1G069440.2	Barley	nucleus	51.66	52.74
TraesCS2B01G299700.1	Wheat	nucleus	51.41	52.21
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	51.15	51.55
Zm00001d042328_P001	Maize	nucleus	51.41	51.54
TraesCS3B01G467900.1	Wheat	nucleus	50.38	51.44
Zm00001d012016_P001	Maize	nucleus	49.87	51.05
KXG34006	Sorghum	nucleus	50.64	50.25
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	48.08	50.13
Os04t0385600-01	Rice	nucleus	50.64	50.13
TraesCS3D01G425300.1	Wheat	nucleus	48.85	49.74
Zm00001d003993_P001	Maize	mitochondrion, nucleus	50.38	49.62
TraesCS3A01G429900.1	Wheat	nucleus	48.59	49.61
Zm00001d049186_P001	Maize	mitochondrion	40.92	48.78
OQU81347	Sorghum	mitochondrion, nucleus	50.9	48.42
GSMUA_Achr9P07210_001	Banana	nucleus	37.6	48.2
TraesCS2A01G282300.1	Wheat	nucleus	51.41	47.86
TraesCS2D01G281100.1	Wheat	nucleus	51.41	47.86
EES09728	Sorghum	cytosol, nucleus, plastid	40.66	47.46
HORVU3Hr1G094600.2	Barley	plastid	50.13	47.46
GSMUA_Achr8P00700_001	Banana	plastid	50.9	45.54
Os11t0488900-00	Rice	mitochondrion	41.69	45.53
HORVU2Hr1G081910.1	Barley	mitochondrion	22.51	44.0
HORVU4Hr1G080860.1	Barley	mitochondrion	22.76	43.84
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	25.32	43.42
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	40.66	41.95
Zm00001d016505_P001	Maize	mitochondrion	32.99	34.22
KXG30224	Sorghum	mitochondrion	25.58	32.47
Os05t0388151-00	Rice	nucleus	13.81	28.72

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100819013	Gene3D:3.30.60.180	MapMan:35.1	EMBL:ACUP02004822	InterPro:F-box-like_dom_sf
EnsemblPlantsGene:GLYMA_08G104400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KS21	InterPro:IPR002893
InterPro:IPR011990	EnsemblPlants:KRH42672	ProteinID:KRH42672	ProteinID:KRH42672.1	PFAM:PF01753	PFscan:PS50865
PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232	SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002338C88	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:8015848..8017688

Molecular Weight (calculated)

42831.4 Da

IEP (calculated)

8.964

GRAVY (calculated)

-0.253

Length

391 amino acids

Sequence
(BLAST)

001: MRTRRGACYP GVVSRMCSNV RVTKKKSKDL HMHMHVPAGD SIIYSRKKQK KTPEKLAAGR YDFFESLPDD LVISIFCKLS STATKPSDFV NVLITSKRLN
101: RLALHSLVLS KASPRTFTIK AKYWCDSAHK FLKHCADAGN IEACYTLGMI RFYCLQNRGS GASLMAKAAI NSHARALYAL AVIQFNGSGG TKSDKDLRAG
201: VALCARAAFL GHVDALRELG HCLQDGYGVR QNIAEGRRFL VQANARELAA VLSTGAAART LLSWNLQPQQ LRQGSGCPLL SDFGCNVPAP DVHPASLFMT
301: EWFAAHGGSP GPGLRLCSNA GCGRPETRKH EFRRCSVCGE VNYCSRACQA LDWKFRHKAE CAPVERWLDE DGEDVGNDDG DGEVEVVMVD S

Best Arabidopsis Sequence Match ( AT5G50450.1 )
(BLAST)

001: MTHLNKKQRL ENNHNNTVNN HFEDLHDDLI ISILRKLATS ASSPSDFLTV LSTCKRLNRL GLHPLVLSKA GTQTLAVTAE KWSDSSHKFL KLCVNAGNID
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER

Arabidopsis Description

F-box protein At5g50450 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK27]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.