CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049186_P001	Maize	mitochondrion	78.21	79.88
Os11t0488900-00	Rice	mitochondrion	68.06	63.69
CDY16365	Canola	cytosol, nucleus, plastid	44.48	48.38
CDX91552	Canola	cytosol, nucleus, plastid	39.4	47.14
Bra022516.1-P	Field mustard	cytosol	45.97	46.39
KXG34006	Sorghum	nucleus	53.43	45.43
KRG97416	Soybean	nucleus	46.87	45.11
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	44.48	44.35
VIT_01s0010g03630.t01	Wine grape	nucleus	50.15	43.64
GSMUA_Achr11P...	Banana	nucleus	45.97	43.38
CDY12640	Canola	nucleus, plastid	44.48	43.19
GSMUA_Achr5P25110_001	Banana	nucleus	47.46	42.97
KRH31482	Soybean	mitochondrion	46.27	42.82
CDY51342	Canola	nucleus	43.88	42.73
CDY07427	Canola	mitochondrion	46.57	42.51
Bra004092.1-P	Field mustard	mitochondrion	46.57	42.51
CDY28891	Canola	mitochondrion, plastid	46.57	42.28
CDY70354	Canola	cytosol	46.87	42.2
Bra004220.1-P	Field mustard	nucleus	46.87	42.2
CDY01803	Canola	mitochondrion, plastid	46.87	41.98
AT1G67340.1	Thale cress	mitochondrion, plastid	47.46	41.95
Solyc05g015420.2.1	Tomato	mitochondrion	48.06	41.71
OQU81347	Sorghum	mitochondrion, nucleus	51.04	41.61
PGSC0003DMT400074839	Potato	nucleus	46.57	41.6
KRH63766	Soybean	cytosol, nucleus, plastid	42.69	41.57
Bra034004.1-P	Field mustard	nucleus, plastid	46.27	41.11
KRH54183	Soybean	cytosol, nucleus, plastid	42.69	41.09
KRH42672	Soybean	mitochondrion	47.46	40.66
KRH58771	Soybean	mitochondrion	46.87	39.85
GSMUA_Achr8P00700_001	Banana	plastid	47.46	36.38
KXG30224	Sorghum	mitochondrion	28.66	31.17

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	EntrezGene:8068715	UniProt:C5Y2F3	EnsemblPlants:EES09728
ProteinID:EES09728	ProteinID:EES09728.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002893	InterPro:IPR011990	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF29
EnsemblPlantsGene:SORBI_3005G115900	SUPFAM:SSF144232	SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A86847
RefSeq:XP_002450740.1	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:50672036..50674183

Molecular Weight (calculated)

35166.9 Da

IEP (calculated)

10.165

GRAVY (calculated)

-0.139

Length

335 amino acids

Sequence
(BLAST)

001: MRKPTTRSGP NKHGSCGGGD RRVATLPAKQ KAAVSGGHRG VAVGAFDCLP DDLVLAVLAG LAARAGCPAD LAAAALPCRR FRDLAAHPAV LSRASAAAVA
101: VPAGRWSDAA HQFLRRCAAA GNLHACYFLG MVRFYCVGGR ATGAALLARA AAGGHAAALY ALAVVQFNGS GGVKADKDPR AGVALCARAA WLGHVPALRE
201: LGHCIQDGYG ARRDAATGRR FLLHAAAREF LVSSSHTHRR NGQEEEDAAS RFMVEWWALA AAKTGGEGDG DADVRLCSHP RCGRRETRRH EFRRCSACGS
301: AVYCSRECQA LDWKRVHRGQ CAAAASRWLA AGNAQ

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.