Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16365 | Canola | cytosol, nucleus, plastid | 97.14 | 88.31 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 82.14 | 68.45 |
| GSMUA_Achr9P29380_001 | Banana | mitochondrion | 58.93 | 50.0 |
| GSMUA_Achr6P06430_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 61.43 | 48.86 |
| GSMUA_Achr9P01480_001 | Banana | nucleus | 60.36 | 48.84 |
| GSMUA_Achr8P17530_001 | Banana | mitochondrion | 61.79 | 48.46 |
| CDY07427 | Canola | mitochondrion | 62.5 | 47.68 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 58.57 | 47.67 |
| CDY28891 | Canola | mitochondrion, plastid | 61.79 | 46.88 |
| CDY12640 | Canola | nucleus, plastid | 57.5 | 46.67 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 57.86 | 46.55 |
| CDY70354 | Canola | cytosol | 61.79 | 46.51 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 63.57 | 46.23 |
| CDY01803 | Canola | mitochondrion, plastid | 61.43 | 45.99 |
| CDY51342 | Canola | nucleus | 55.71 | 45.35 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 58.21 | 44.05 |
| GSMUA_Achr11P... | Banana | nucleus | 55.0 | 43.38 |
| Zm00001d025218_P001 | Maize | nucleus | 56.07 | 42.09 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 56.79 | 41.3 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 56.43 | 41.25 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 57.14 | 41.24 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 56.43 | 41.15 |
| Zm00001d012016_P001 | Maize | nucleus | 56.07 | 41.1 |
| Zm00001d042328_P001 | Maize | nucleus | 57.14 | 41.03 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 56.07 | 40.99 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 54.64 | 40.8 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 55.71 | 40.73 |
| KXG34006 | Sorghum | nucleus | 56.79 | 40.36 |
| GSMUA_Achr9P07210_001 | Banana | nucleus | 43.21 | 39.67 |
| Os04t0385600-01 | Rice | nucleus | 55.71 | 39.49 |
| EES09728 | Sorghum | cytosol, nucleus, plastid | 47.14 | 39.4 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 55.36 | 39.04 |
| HORVU3Hr1G094600.2 | Barley | plastid | 56.79 | 38.5 |
| Zm00001d049186_P001 | Maize | mitochondrion | 45.0 | 38.41 |
| Os11t0488900-00 | Rice | mitochondrion | 48.93 | 38.27 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 57.14 | 38.1 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 55.71 | 37.96 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 56.43 | 37.62 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 57.14 | 36.61 |
| HORVU1Hr1G007300.2 | Barley | cytosol, mitochondrion, peroxisome | 29.29 | 35.96 |
| HORVU2Hr1G081910.1 | Barley | mitochondrion | 25.36 | 35.5 |
| HORVU4Hr1G080860.1 | Barley | mitochondrion | 25.71 | 35.47 |
| Os02t0506400-00 | Rice | cytosol, mitochondrion, nucleus | 47.14 | 34.83 |
| Zm00001d016505_P001 | Maize | mitochondrion | 38.21 | 28.38 |
| Os05t0388151-00 | Rice | nucleus | 18.57 | 27.66 |
| KXG30224 | Sorghum | mitochondrion | 27.5 | 25.0 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | EnsemblPlants:CDX91552 | ProteinID:CDX91552 | ProteinID:CDX91552.1 |
| InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00152940001 | InterPro:IPR002893 |
| InterPro:IPR011990 | PFAM:PF01753 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF37 | SUPFAM:SSF144232 |
| SUPFAM:SSF81383 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004EEA041 | InterPro:Znf_MYND | SEG:seg |
Description
BnaC02g16080D
Coordinates
chrLK031868:-:304783..305959
Molecular Weight (calculated)
30570.8 Da
IEP (calculated)
8.327
GRAVY (calculated)
-0.175
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHLNKKPRL EKNLTVNHID DLPDDLVFSI LRKLSSSASC PADFFNVLIT CKRLNRLERE LKLCINAGNI DACYALGMIR FYCLQNPVSG ASLMARAAIK
101: SHAPALYSLS VIQFNGSGGN KSDKNLRAGV ALCARSAYLG HVDALRELGH CLQDGYGVPR DVAEGRRLLI QANARELAGS LRSYLSLKSG DETLTELNGL
201: PGLRMCSHGG CGRPETRSHE FRRCSVCGKV NYCSRGCQAL DWRVKHKMEC APLDLWVGAA AIGVGDEDVD AVEVENHAAR
101: SHAPALYSLS VIQFNGSGGN KSDKNLRAGV ALCARSAYLG HVDALRELGH CLQDGYGVPR DVAEGRRLLI QANARELAGS LRSYLSLKSG DETLTELNGL
201: PGLRMCSHGG CGRPETRSHE FRRCSVCGKV NYCSRGCQAL DWRVKHKMEC APLDLWVGAA AIGVGDEDVD AVEVENHAAR
001: MTHLNKKQRL ENNHNNTVNN HFEDLHDDLI ISILRKLATS ASSPSDFLTV LSTCKRLNRL GLHPLVLSKA GTQTLAVTAE KWSDSSHKFL KLCVNAGNID
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
Arabidopsis Description
F-box protein At5g50450 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK27]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.