Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G069440.2 | Barley | nucleus | 77.21 | 75.2 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 82.57 | 74.94 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 79.09 | 74.31 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 76.14 | 73.77 |
| Os04t0385600-01 | Rice | nucleus | 76.41 | 72.15 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 76.41 | 67.86 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 75.6 | 67.14 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 42.09 | 56.07 |
| Zm00001d012016_P001 | Maize | nucleus | 56.3 | 54.97 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 45.04 | 54.55 |
| Zm00001d042328_P001 | Maize | nucleus | 56.84 | 54.36 |
| KRG97416 | Soybean | nucleus | 50.67 | 54.31 |
| CDY12640 | Canola | nucleus, plastid | 50.13 | 54.2 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 53.62 | 54.05 |
| Bra022516.1-P | Field mustard | cytosol | 47.72 | 53.61 |
| KRH31482 | Soybean | mitochondrion | 51.74 | 53.31 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 54.69 | 52.99 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 47.45 | 52.68 |
| CDY51342 | Canola | nucleus | 48.26 | 52.33 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 53.89 | 52.07 |
| CDY07427 | Canola | mitochondrion | 51.21 | 52.04 |
| Bra004220.1-P | Field mustard | nucleus | 51.74 | 51.88 |
| CDY70354 | Canola | cytosol | 51.74 | 51.88 |
| Zm00001d049186_P001 | Maize | mitochondrion | 45.58 | 51.83 |
| PGSC0003DMT400074839 | Potato | nucleus | 52.01 | 51.73 |
| CDY01803 | Canola | mitochondrion, plastid | 51.74 | 51.6 |
| GSMUA_Achr11P... | Banana | nucleus | 49.06 | 51.55 |
| CDY28891 | Canola | mitochondrion, plastid | 50.94 | 51.49 |
| Bra004092.1-P | Field mustard | mitochondrion | 50.4 | 51.23 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 52.01 | 51.19 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 51.47 | 50.93 |
| KRH42672 | Soybean | mitochondrion | 52.81 | 50.38 |
| KRH58771 | Soybean | mitochondrion | 52.28 | 49.49 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 45.58 | 49.42 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 45.58 | 48.85 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 52.55 | 44.85 |
| Zm00001d016505_P001 | Maize | mitochondrion | 38.07 | 37.67 |
| Os05t0388151-00 | Rice | nucleus | 17.43 | 34.57 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | ProteinID:AQK43216.1 | InterPro:F-box-like_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 | UniProt:K7TJT2 | PFAM:PF01753 |
| PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002215BCF | EnsemblPlantsGene:Zm00001d025218 | EnsemblPlants:Zm00001d025218_P001 | EnsemblPlants:Zm00001d025218_T001 | InterPro:Znf_MYND |
| SEG:seg | : | : | : | : | : |
Description
MYND finger family protein
Coordinates
chr10:-:109657976..109659501
Molecular Weight (calculated)
39517.3 Da
IEP (calculated)
8.716
GRAVY (calculated)
-0.164
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTRRGACYS CHAAPGEGPE VQRRKRRRTA AEASPAAAED PGVRLGARDM FEDLPDDLVV SILRDVAASA GSPADLAGAM LTCKRFRELV ARSKVVVLAR
101: ASPRCLSVRA KAWSDEAHRF LQRCADAGNL EACYLLGMIR FYCLGSRGSG AALMAAAAVG GHREALYSLA VIQFNGSGGG KDDRDLRAGA ALCARAAARG
201: HVDALRELGH CLQDGYGVRR SVLDGRRLLI QANARELAAA SVAHPCLLMS DLGCRAGEAH AANRFLVDWF ASRPLGLTPG GNGNGSAGTA GSPEEDGVGG
301: LRLCSQALCG RPETRRHEFR RCSVCGVVNY CSRACQALHW RMAHKAECTP MDRWLDAVQP NAIANADAAA PAP
101: ASPRCLSVRA KAWSDEAHRF LQRCADAGNL EACYLLGMIR FYCLGSRGSG AALMAAAAVG GHREALYSLA VIQFNGSGGG KDDRDLRAGA ALCARAAARG
201: HVDALRELGH CLQDGYGVRR SVLDGRRLLI QANARELAAA SVAHPCLLMS DLGCRAGEAH AANRFLVDWF ASRPLGLTPG GNGNGSAGTA GSPEEDGVGG
301: LRLCSQALCG RPETRRHEFR RCSVCGVVNY CSRACQALHW RMAHKAECTP MDRWLDAVQP NAIANADAAA PAP
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.