Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34006 | Sorghum | nucleus | 89.74 | 88.83 |
| Zm00001d012016_P001 | Maize | nucleus | 82.56 | 84.29 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 76.67 | 77.06 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 74.1 | 75.46 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 73.85 | 75.0 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 73.33 | 74.67 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 71.28 | 74.13 |
| HORVU3Hr1G094600.2 | Barley | plastid | 74.36 | 70.22 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 41.03 | 57.14 |
| Zm00001d025218_P001 | Maize | nucleus | 54.36 | 56.84 |
| KRG97416 | Soybean | nucleus | 50.26 | 56.32 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 44.1 | 55.84 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 54.36 | 55.06 |
| KRH31482 | Soybean | mitochondrion | 51.03 | 54.97 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 55.9 | 54.91 |
| Zm00001d049186_P001 | Maize | mitochondrion | 45.64 | 54.27 |
| PGSC0003DMT400074839 | Potato | nucleus | 52.05 | 54.13 |
| CDY12640 | Canola | nucleus, plastid | 47.69 | 53.91 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 53.33 | 53.89 |
| CDY07427 | Canola | mitochondrion | 50.26 | 53.41 |
| Bra022516.1-P | Field mustard | cytosol | 45.38 | 53.31 |
| CDY51342 | Canola | nucleus | 46.92 | 53.2 |
| CDY01803 | Canola | mitochondrion, plastid | 50.77 | 52.94 |
| CDY28891 | Canola | mitochondrion, plastid | 50.0 | 52.85 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 50.0 | 52.7 |
| CDY70354 | Canola | cytosol | 50.26 | 52.69 |
| Bra004092.1-P | Field mustard | mitochondrion | 49.49 | 52.59 |
| Bra004220.1-P | Field mustard | nucleus | 50.0 | 52.42 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 50.77 | 52.24 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 50.26 | 51.99 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 44.36 | 51.49 |
| KRH42672 | Soybean | mitochondrion | 51.54 | 51.41 |
| KRH58771 | Soybean | mitochondrion | 51.79 | 51.27 |
| GSMUA_Achr11P... | Banana | nucleus | 46.15 | 50.7 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 44.36 | 50.29 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 44.87 | 50.29 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 49.49 | 44.16 |
| Zm00001d016505_P001 | Maize | mitochondrion | 33.33 | 34.48 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:1.25.40.10 | EntrezGene:100273107 | Gene3D:3.30.60.180 | MapMan:35.1 | UniProt:A0A1D6N2W7 |
| InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 |
| ProteinID:ONM35050.1 | PFAM:PF01753 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 | SUPFAM:SSF144232 |
| SUPFAM:SSF81383 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002217E78 | EnsemblPlantsGene:Zm00001d042328 | EnsemblPlants:Zm00001d042328_P001 |
| EnsemblPlants:Zm00001d042328_T001 | InterPro:Znf_MYND | SEG:seg | : | : | : |
Description
F-box protein
Coordinates
chr3:+:161430816..161432463
Molecular Weight (calculated)
40749.5 Da
IEP (calculated)
8.766
GRAVY (calculated)
-0.152
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRSGSRYS NGGEVVALVG QKRKRSPSAV AGECDCGGRR KRPAGEPDYL DALPDDLVLS ILSKLAAASS APSDLLSVHL TCKRLNELGS HDMVFAKASP
101: ASLAVKAAAW SEPAQRFLKR CADAGNLEAC YNLGMIRFYC LGSRSGGAAL LARAAVGGHA AALYSLAVIQ FNGSGGAKSD RDLRAGAALC ARAASLGHVD
201: ALRELGHCLQ DGYGVRRDPA EGRRLLVAAN ARELTLALSA AASRHAVAAL PFAAAAGVVG GGGGCPLLSD FGWSLPEAEP HAANQFMVDW WASRCAAQAG
301: GKKDGDGSGV DGDGDGAELR LCSHVRCGRR ETRRHEFRRC SVCGAANYCS RACQALDWKR AHKAQCVPMD RWLLAGVAVG GGVEAQQHQQ
101: ASLAVKAAAW SEPAQRFLKR CADAGNLEAC YNLGMIRFYC LGSRSGGAAL LARAAVGGHA AALYSLAVIQ FNGSGGAKSD RDLRAGAALC ARAASLGHVD
201: ALRELGHCLQ DGYGVRRDPA EGRRLLVAAN ARELTLALSA AASRHAVAAL PFAAAAGVVG GGGGCPLLSD FGWSLPEAEP HAANQFMVDW WASRCAAQAG
301: GKKDGDGSGV DGDGDGAELR LCSHVRCGRR ETRRHEFRRC SVCGAANYCS RACQALDWKR AHKAQCVPMD RWLLAGVAVG GGVEAQQHQQ
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]
SUBAcon: [plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.