Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042328_P001 | Maize | nucleus | 84.29 | 82.56 |
| KXG34006 | Sorghum | nucleus | 81.68 | 79.19 |
| Os01t0921800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 74.35 | 73.2 |
| TraesCS3B01G467900.1 | Wheat | nucleus | 73.04 | 72.85 |
| TraesCS3D01G425300.1 | Wheat | nucleus | 73.04 | 72.66 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 72.25 | 72.06 |
| TraesCS3B01G468000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 70.16 | 71.47 |
| HORVU3Hr1G094600.2 | Barley | plastid | 73.3 | 67.8 |
| Zm00001d025218_P001 | Maize | nucleus | 54.97 | 56.3 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 41.1 | 56.07 |
| KRG97416 | Soybean | nucleus | 50.26 | 55.17 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 43.98 | 54.55 |
| KRH31482 | Soybean | mitochondrion | 51.57 | 54.42 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 56.28 | 54.16 |
| CDY28891 | Canola | mitochondrion, plastid | 52.09 | 53.93 |
| CDY12640 | Canola | nucleus, plastid | 48.69 | 53.91 |
| PGSC0003DMT400074839 | Potato | nucleus | 52.88 | 53.87 |
| CDY51342 | Canola | nucleus | 48.43 | 53.78 |
| Zm00001d049186_P001 | Maize | mitochondrion | 46.07 | 53.66 |
| CDY07427 | Canola | mitochondrion | 51.05 | 53.13 |
| Bra004092.1-P | Field mustard | mitochondrion | 50.79 | 52.86 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 53.4 | 52.85 |
| Bra004220.1-P | Field mustard | nucleus | 51.31 | 52.69 |
| CDY70354 | Canola | cytosol | 51.31 | 52.69 |
| CDY01803 | Canola | mitochondrion, plastid | 51.57 | 52.67 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 51.57 | 52.25 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 51.83 | 52.24 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 50.52 | 52.16 |
| Bra022516.1-P | Field mustard | cytosol | 45.29 | 52.11 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 52.36 | 51.95 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 44.76 | 50.89 |
| KRH58771 | Soybean | mitochondrion | 51.57 | 50.0 |
| KRH42672 | Soybean | mitochondrion | 51.05 | 49.87 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 45.29 | 49.71 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 44.5 | 49.42 |
| GSMUA_Achr11P... | Banana | nucleus | 45.55 | 49.01 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 48.17 | 42.11 |
| Zm00001d016505_P001 | Maize | mitochondrion | 34.55 | 35.01 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100501731 | Gene3D:3.30.60.180 | MapMan:35.1 | ProteinID:AQK98590.1 | InterPro:F-box-like_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 | UniProt:K7V273 |
| PFAM:PF01753 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 | SUPFAM:SSF144232 | SUPFAM:SSF81383 |
| SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000221C8D2 | EnsemblPlantsGene:Zm00001d012016 | EnsemblPlants:Zm00001d012016_P001 | EnsemblPlants:Zm00001d012016_T001 |
| InterPro:Znf_MYND | SEG:seg | : | : | : | : |
Description
F-box protein
Coordinates
chr8:+:166534607..166536143
Molecular Weight (calculated)
40230.7 Da
IEP (calculated)
8.493
GRAVY (calculated)
-0.202
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRSGSRYS NGGGEDALVG QKRKRAASAV AGECACCERR KRPADGPDYL DALPDDLVLS ILTKVAADSS APADLLSVHL TCKRLNELGS HDMVFAKASP
101: ASLSVKAAAW SEAAQRFLKR SADAGNLEAC YILGMIRFYC LGSRSGGAAL LAKAAVGGHA AALYSLAVIQ FNGSGGAKSD RDLRAGAALC ARAAALGHVD
201: ALRELGHCLQ DGYGVRRDPA EGRRLLVSAN ARELTLALSA AASRHAAGVV VGGGGGGGCP LLSDFGWSLP EAEPHAANQF MVDWWWASDR CAAQAGGKIT
301: GESGVDGDGA ELRLCSHVRC GRRETRRHEF RRCSVCGAAN YCSRACQALD WKRAHKVQCV PVDRWLLGAV GDAQDQQQQQ PQ
101: ASLSVKAAAW SEAAQRFLKR SADAGNLEAC YILGMIRFYC LGSRSGGAAL LAKAAVGGHA AALYSLAVIQ FNGSGGAKSD RDLRAGAALC ARAAALGHVD
201: ALRELGHCLQ DGYGVRRDPA EGRRLLVSAN ARELTLALSA AASRHAAGVV VGGGGGGGCP LLSDFGWSLP EAEPHAANQF MVDWWWASDR CAAQAGGKIT
301: GESGVDGDGA ELRLCSHVRC GRRETRRHEF RRCSVCGAAN YCSRACQALD WKRAHKVQCV PVDRWLLGAV GDAQDQQQQQ PQ
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.