Factsheet for GSMUA_Achr5P25110_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	63.24	65.92
GSMUA_Achr9P29380_001	Banana	mitochondrion	57.57	64.55
GSMUA_Achr9P01480_001	Banana	nucleus	59.73	63.87
GSMUA_Achr8P17530_001	Banana	mitochondrion	60.0	62.18
KRG97416	Soybean	nucleus	56.76	60.34
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	56.49	59.38
KRH31482	Soybean	mitochondrion	57.57	58.84
CDY16365	Canola	cytosol, nucleus, plastid	48.65	58.44
CDX91552	Canola	cytosol, nucleus, plastid	44.05	58.21
PGSC0003DMT400074839	Potato	nucleus	57.84	57.07
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	51.62	56.85
VIT_01s0010g03630.t01	Wine grape	nucleus	58.65	56.36
Bra022516.1-P	Field mustard	cytosol	50.54	56.33
GSMUA_Achr8P00700_001	Banana	plastid	65.68	55.61
CDY07427	Canola	mitochondrion	55.14	55.59
CDY28891	Canola	mitochondrion, plastid	55.41	55.56
Solyc05g015420.2.1	Tomato	mitochondrion	57.84	55.44
AT1G67340.1	Thale cress	mitochondrion, plastid	56.76	55.41
CDY70354	Canola	cytosol	55.68	55.38
Bra004220.1-P	Field mustard	nucleus	55.68	55.38
CDY01803	Canola	mitochondrion, plastid	55.68	55.08
Bra004092.1-P	Field mustard	mitochondrion	54.59	55.04
HORVU2Hr1G069440.2	Barley	nucleus	56.76	54.83
TraesCS2B01G299700.1	Wheat	nucleus	57.03	54.81
CDY12640	Canola	nucleus, plastid	50.54	54.2
KRH63766	Soybean	cytosol, nucleus, plastid	50.27	54.07
CDY51342	Canola	nucleus	50.0	53.78
Zm00001d025218_P001	Maize	nucleus	54.05	53.62
TraesCS3A01G429900.1	Wheat	nucleus	54.59	52.74
Os04t0385600-01	Rice	nucleus	56.22	52.66
TraesCS3D01G425300.1	Wheat	nucleus	54.32	52.34
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	54.86	52.32
KRH54183	Soybean	cytosol, nucleus, plastid	49.19	52.3
Bra034004.1-P	Field mustard	nucleus, plastid	53.24	52.25
KRH42672	Soybean	mitochondrion	55.14	52.17
KRH58771	Soybean	mitochondrion	55.14	51.78
TraesCS3B01G467900.1	Wheat	nucleus	53.51	51.7
Zm00001d012016_P001	Maize	nucleus	52.16	50.52
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.08	50.4
TraesCS2D01G281100.1	Wheat	nucleus	57.03	50.24
OQU81347	Sorghum	mitochondrion, nucleus	55.68	50.12
Zm00001d042328_P001	Maize	nucleus	52.7	50.0
TraesCS2A01G282300.1	Wheat	nucleus	56.49	49.76
Zm00001d003993_P001	Maize	mitochondrion, nucleus	53.24	49.62
Zm00001d049186_P001	Maize	mitochondrion	43.24	48.78
KXG34006	Sorghum	nucleus	51.89	48.73
GSMUA_Achr9P07210_001	Banana	nucleus	39.73	48.2
EES09728	Sorghum	cytosol, nucleus, plastid	42.97	47.46
HORVU3Hr1G094600.2	Barley	plastid	52.97	47.46
Os11t0488900-00	Rice	mitochondrion	45.41	46.93
HORVU2Hr1G081910.1	Barley	mitochondrion	25.14	46.5
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	47.03	45.91
HORVU4Hr1G080860.1	Barley	mitochondrion	25.14	45.81
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	28.11	45.61
Zm00001d016505_P001	Maize	mitochondrion	34.59	33.95
Os05t0388151-00	Rice	nucleus	16.76	32.98
KXG30224	Sorghum	mitochondrion	26.76	32.14

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr5G25110_001	EnsemblPlants:GSMUA_Achr5P25110_001	EnsemblPlants:GSMUA_Achr5T25110_001	InterPro:IPR002893	InterPro:IPR011990
UniProt:M0T1I6	PFAM:PF01753	PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232
SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029687B1	InterPro:Znf_MYND	SEG:seg

Description

F-box protein At1g67340 [Source:GMGC_GENE;Acc:GSMUA_Achr5G25110_001]

Coordinates

chr5:+:26247572..26248976

Molecular Weight (calculated)

39884.4 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.390

Length

370 amino acids

Sequence
(BLAST)

001: MRRRTRSASQ CLRARPRIDG GGAPREERKR KRRGGRATER GAESCGRKRP RGAPAGAPAE VEDRADYFDG LPDDLVVSVL SKLSSSARRP LDLISAMLTC
101: KRFHGLGHHP LVLSKVSAGC LGVRANTWSD SSHRFLKRCA DCGNLEASYM LGMIRFYALE NRGSGASLMA RAAIGSNPAA LYSLSVIQFN GSGGSKTDKD
201: LRAGVALCAR AAFLGHVDAL RELGHCLQDG YGVRRNVAEG RRFLVQANAR ELAAAMTDYG WNVPAPAPHP ANRFLVEWFR ERGWPAAAAA EGLRLCSYSG
301: CGRPETRRHE FRRCSVCGVV NYCSRACQAL DWKLSHKSEC VPTDLQALDG DGAPAGDDVA PAVDGAAGTD

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.