Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G299700.1 | Wheat | nucleus | 88.1 | 96.1 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 95.0 | 95.0 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 85.0 | 93.21 |
| Os04t0385600-01 | Rice | nucleus | 71.9 | 76.46 |
| Zm00001d025218_P001 | Maize | nucleus | 67.14 | 75.6 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 71.43 | 72.99 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 66.67 | 70.53 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 49.76 | 56.49 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 37.62 | 56.43 |
| CDY12640 | Canola | nucleus, plastid | 46.19 | 56.23 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 44.76 | 55.95 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 40.95 | 55.84 |
| PGSC0003DMT400074839 | Potato | nucleus | 49.52 | 55.47 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 50.95 | 55.44 |
| KRG97416 | Soybean | nucleus | 45.71 | 55.17 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 50.48 | 55.06 |
| CDY07427 | Canola | mitochondrion | 47.86 | 54.77 |
| KRH31482 | Soybean | mitochondrion | 47.14 | 54.7 |
| CDY51342 | Canola | nucleus | 44.76 | 54.65 |
| TraesCS3A01G429900.1 | Wheat | nucleus | 49.76 | 54.57 |
| Bra004092.1-P | Field mustard | mitochondrion | 47.38 | 54.22 |
| Bra022516.1-P | Field mustard | cytosol | 42.86 | 54.22 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 44.29 | 54.07 |
| CDY28891 | Canola | mitochondrion, plastid | 47.14 | 53.66 |
| Bra004220.1-P | Field mustard | nucleus | 47.38 | 53.49 |
| CDY70354 | Canola | cytosol | 47.38 | 53.49 |
| CDY01803 | Canola | mitochondrion, plastid | 47.62 | 53.48 |
| GSMUA_Achr11P... | Banana | nucleus | 45.0 | 53.24 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 43.81 | 52.87 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 47.38 | 52.79 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 46.67 | 51.72 |
| KRH42672 | Soybean | mitochondrion | 47.86 | 51.41 |
| KRH58771 | Soybean | mitochondrion | 48.1 | 51.27 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 48.33 | 46.45 |
| Os05t0388151-00 | Rice | nucleus | 15.95 | 35.64 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G282300.1 | EnsemblPlantsGene:TraesCS2A01G282300 | Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf | InterPro:Znf_MYND | PANTHER:PTHR12298 |
| PANTHER:PTHR12298:SF29 | PFAM:PF01753 | PFscan:PS50865 | SEG:seg | SUPFAM:SSF144232 | SUPFAM:SSF81901 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:471816384..471818105
Molecular Weight (calculated)
44452.1 Da
IEP (calculated)
8.638
GRAVY (calculated)
-0.080
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTRRGACYS CHDPAAEAPE MHRRKRRRTA METAGCAGAA VGDLFEDLPD DLLVSILADV AASARSPADL AGAIMTYVPL YSAFLYECES SLGWRWSSYG
101: ELLGCARRCK RFRELGQNKV VLAKVSPRCL AVRAKSWSDS AHRFLQRCAD AGNLDACYLL GMIRFYCLGS RGSGAALMAA AAVGGHREAL YSLAVIQFNG
201: SGGSKDDRDL RAGAALCARA ASLGHVDALR ELGHCLQDGY GVRRSLLDGR RLLIQANARE LAAAVTTSAS LLRAAAGSGK ASRRHSCLLS DFGCRAAAAA
301: AGEAHAANRF LVEWFASQPL GAESSPAPAP APAAAEEGGG LRLCSHALCG RPETRRHEFR RCSVCGVVNY CSRACQALHW KMAHKAECTP MDRWLDGANA
401: NPNPNAVAGA GDAAVVAPAL
101: ELLGCARRCK RFRELGQNKV VLAKVSPRCL AVRAKSWSDS AHRFLQRCAD AGNLDACYLL GMIRFYCLGS RGSGAALMAA AAVGGHREAL YSLAVIQFNG
201: SGGSKDDRDL RAGAALCARA ASLGHVDALR ELGHCLQDGY GVRRSLLDGR RLLIQANARE LAAAVTTSAS LLRAAAGSGK ASRRHSCLLS DFGCRAAAAA
301: AGEAHAANRF LVEWFASQPL GAESSPAPAP APAAAEEGGG LRLCSHALCG RPETRRHEFR RCSVCGVVNY CSRACQALHW KMAHKAECTP MDRWLDGANA
401: NPNPNAVAGA GDAAVVAPAL
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]
SUBAcon: [plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.