Factsheet for PGSC0003DMT400074839

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015420.2.1	Tomato	mitochondrion	89.6	87.05
VIT_01s0010g03630.t01	Wine grape	nucleus	71.73	69.87
CDY12640	Canola	nucleus, plastid	60.27	65.51
Bra004220.1-P	Field mustard	nucleus	64.8	65.32
CDY70354	Canola	cytosol	64.8	65.32
CDY07427	Canola	mitochondrion	63.73	65.12
CDY28891	Canola	mitochondrion, plastid	64.0	65.04
CDY01803	Canola	mitochondrion, plastid	64.8	64.97
Bra004092.1-P	Field mustard	mitochondrion	63.2	64.58
GSMUA_Achr9P29380_001	Banana	mitochondrion	56.53	64.24
AT1G67340.1	Thale cress	mitochondrion, plastid	64.0	63.32
Bra034004.1-P	Field mustard	nucleus, plastid	63.47	63.13
CDY51342	Canola	nucleus	57.87	63.08
GSMUA_Achr8P17530_001	Banana	mitochondrion	60.0	63.03
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	58.67	62.5
GSMUA_Achr9P01480_001	Banana	nucleus	56.8	61.56
GSMUA_Achr5P25110_001	Banana	nucleus	57.07	57.84
GSMUA_Achr11P...	Banana	nucleus	51.47	54.37
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	55.2	53.35
TraesCS2B01G299700.1	Wheat	nucleus	54.67	53.25
TraesCS3A01G429900.1	Wheat	nucleus	54.13	53.0
HORVU2Hr1G069440.2	Barley	nucleus	54.13	53.0
Zm00001d012016_P001	Maize	nucleus	53.87	52.88
TraesCS3B01G467900.1	Wheat	nucleus	53.87	52.74
TraesCS3D01G425300.1	Wheat	nucleus	53.87	52.6
KXG34006	Sorghum	nucleus	55.2	52.54
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.53	52.53
Zm00001d042328_P001	Maize	nucleus	54.13	52.05
Zm00001d025218_P001	Maize	nucleus	51.73	52.01
Zm00001d003993_P001	Maize	mitochondrion, nucleus	53.33	50.38
Os04t0385600-01	Rice	nucleus	52.53	49.87
TraesCS2A01G282300.1	Wheat	nucleus	55.47	49.52
TraesCS2D01G281100.1	Wheat	nucleus	55.47	49.52
OQU81347	Sorghum	mitochondrion, nucleus	53.33	48.66
GSMUA_Achr9P07210_001	Banana	nucleus	39.2	48.2
HORVU3Hr1G094600.2	Barley	plastid	53.07	48.18
EES09728	Sorghum	cytosol, nucleus, plastid	41.6	46.57
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	28.27	46.49
HORVU2Hr1G081910.1	Barley	mitochondrion	24.53	46.0
HORVU4Hr1G080860.1	Barley	mitochondrion	24.8	45.81
GSMUA_Achr8P00700_001	Banana	plastid	53.33	45.77
Zm00001d049186_P001	Maize	mitochondrion	40.0	45.73
Os11t0488900-00	Rice	mitochondrion	43.2	45.25
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	43.2	42.74
Zm00001d016505_P001	Maize	mitochondrion	34.4	34.22
KXG30224	Sorghum	mitochondrion	26.4	32.14
Os05t0388151-00	Rice	nucleus	14.67	29.26

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.60.180	MapMan:35.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR002893
InterPro:IPR011990	UniProt:M1CU89	PFAM:PF01753	EnsemblPlantsGene:PGSC0003DMG400029105	PGSC:PGSC0003DMG400029105	EnsemblPlants:PGSC0003DMT400074839
PFscan:PS50865	PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232	SUPFAM:SSF81383	SUPFAM:SSF81901
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002969791	InterPro:Znf_MYND	SEG:seg	:	:

Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029105]

Coordinates

chr5:-:13687525..13689368

Molecular Weight (calculated)

40670.4 Da

IEP (calculated)

8.119

GRAVY (calculated)

-0.324

Length

375 amino acids

Sequence
(BLAST)

001: MCIENKIVKR KRNDFSGIGD RRKRSKLSPE ITGHHPDLFD SLPDDLVVSI LCKLTSSAAS PADFVNVLIT CKRLNGLGHH SLVLSKASQK MLTVKAQNWS
101: ESAQRFLKQC ADAGNVEACY TLGMIRFYCL QNRGSGASLM AKAAISSHAP SLYSLAVIQF NGSGGSKNDK DLRAGVALCA RAAFLGHIDA LRELGHCLQD
201: GYGVKQNIAE GRRFLVQANA RELAAVLSMT PSALTAGGWL TWNPLPHHRH GAGSGCPLLS DFGCNVPAPE AHPANQFLTE WFLNSSKGGV PGSGLRLCSH
301: AGCGRPESRR HEFRRCSVCG TVNYCSRACQ ALDWKMRHKA ECTLVERWID EDGENDGNGN GDGEMGEEDQ NMVES

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.