Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025218_P001 | Maize | nucleus | 74.31 | 79.09 |
| OQU81347 | Sorghum | mitochondrion, nucleus | 79.6 | 76.89 |
| Os04t0385600-01 | Rice | nucleus | 74.81 | 75.19 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 71.54 | 74.15 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 70.28 | 72.47 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 70.53 | 66.67 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 70.28 | 66.43 |
| CDY12640 | Canola | nucleus, plastid | 49.12 | 56.52 |
| Zm00001d012016_P001 | Maize | nucleus | 54.16 | 56.28 |
| CDY51342 | Canola | nucleus | 48.61 | 56.1 |
| Zm00001d042328_P001 | Maize | nucleus | 54.91 | 55.9 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 53.9 | 55.58 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 43.07 | 55.52 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 39.04 | 55.36 |
| KRG97416 | Soybean | nucleus | 48.11 | 54.89 |
| Bra004220.1-P | Field mustard | nucleus | 51.13 | 54.57 |
| CDY70354 | Canola | cytosol | 51.13 | 54.57 |
| CDY07427 | Canola | mitochondrion | 50.38 | 54.5 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 52.9 | 54.4 |
| CDY01803 | Canola | mitochondrion, plastid | 51.13 | 54.28 |
| Bra022516.1-P | Field mustard | cytosol | 45.34 | 54.22 |
| GSMUA_Achr11P... | Banana | nucleus | 48.11 | 53.8 |
| KRH31482 | Soybean | mitochondrion | 48.87 | 53.59 |
| Bra004092.1-P | Field mustard | mitochondrion | 49.37 | 53.41 |
| CDY28891 | Canola | mitochondrion, plastid | 49.62 | 53.39 |
| PGSC0003DMT400074839 | Potato | nucleus | 50.38 | 53.33 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 50.88 | 53.3 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 49.62 | 53.24 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 50.13 | 52.79 |
| Zm00001d049186_P001 | Maize | mitochondrion | 43.58 | 52.74 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 45.59 | 52.62 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 44.33 | 52.38 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 45.59 | 52.01 |
| KRH42672 | Soybean | mitochondrion | 49.62 | 50.38 |
| KRH58771 | Soybean | mitochondrion | 49.12 | 49.49 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 50.38 | 45.77 |
| Zm00001d016505_P001 | Maize | mitochondrion | 35.77 | 37.67 |
| Os05t0388151-00 | Rice | nucleus | 17.13 | 36.17 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | UniProt:A0A1D6ECT9 | InterPro:F-box-like_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 | ProteinID:ONM18116.1 | PFAM:PF01753 |
| PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000844EA9E | EnsemblPlantsGene:Zm00001d003993 | EnsemblPlants:Zm00001d003993_P001 | EnsemblPlants:Zm00001d003993_T001 | InterPro:Znf_MYND |
| SEG:seg | : | : | : | : | : |
Description
F-box protein
Coordinates
chr2:+:74154075..74155773
Molecular Weight (calculated)
41236.4 Da
IEP (calculated)
9.234
GRAVY (calculated)
-0.127
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTRRGACHA AAAATAPGEG PEAQRRKRRR TAAAEGSPAA AGTPGVRPVG RDMFEELPDD LVVSILRDVA ASASSPADLA GAMLTCKRFR ELGQSKVVLA
101: RASPRCLAVR AKAWSEEAHR FLQRCADAGS LEACYLLGMI RFYCLGIRGS GAALMAAAAV GGHREALYSL AVVQFNGSGG GKDDRDLRAG AALCARAASL
201: GHVGALRELG HCLQDGYGVR RSVLDGRRLL IQANARELAA VAASPPPQLL GKAAPHPTRR HSCLLSDFGC RAAAGEPHAA NRFLADWFAS RPLGTAAAVA
301: AGGGSGSSPE EDGAGALRLC SQALCGRPET RRHEFRRCSV CGLVNYCSRA CQALHWKMAH KAECTPMDRW LDVVGVGGGA APQPHANADG AAAAPAP
101: RASPRCLAVR AKAWSEEAHR FLQRCADAGS LEACYLLGMI RFYCLGIRGS GAALMAAAAV GGHREALYSL AVVQFNGSGG GKDDRDLRAG AALCARAASL
201: GHVGALRELG HCLQDGYGVR RSVLDGRRLL IQANARELAA VAASPPPQLL GKAAPHPTRR HSCLLSDFGC RAAAGEPHAA NRFLADWFAS RPLGTAAAVA
301: AGGGSGSSPE EDGAGALRLC SQALCGRPET RRHEFRRCSV CGLVNYCSRA CQALHWKMAH KAECTPMDRW LDVVGVGGGA APQPHANADG AAAAPAP
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.