Factsheet for TraesCS2D01G281100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G299700.1	Wheat	nucleus	89.29	97.4
TraesCS2A01G282300.1	Wheat	nucleus	95.0	95.0
HORVU2Hr1G069440.2	Barley	nucleus	85.71	93.99
Zm00001d025218_P001	Maize	nucleus	67.86	76.41
Os04t0385600-01	Rice	nucleus	70.95	75.44
OQU81347	Sorghum	mitochondrion, nucleus	71.43	72.99
Zm00001d003993_P001	Maize	mitochondrion, nucleus	66.43	70.28
CDX91552	Canola	cytosol, nucleus, plastid	38.1	57.14
GSMUA_Achr5P25110_001	Banana	nucleus	50.24	57.03
CDY12640	Canola	nucleus, plastid	46.43	56.52
TraesCS3D01G425300.1	Wheat	nucleus	51.67	56.51
CDY16365	Canola	cytosol, nucleus, plastid	41.43	56.49
AT5G50450.1	Thale cress	cytosol, nucleus, plastid	45.0	56.25
KRG97416	Soybean	nucleus	46.19	55.75
Solyc05g015420.2.1	Tomato	mitochondrion	51.19	55.7
PGSC0003DMT400074839	Potato	nucleus	49.52	55.47
Bra022516.1-P	Field mustard	cytosol	43.57	55.12
Bra004092.1-P	Field mustard	mitochondrion	48.1	55.04
CDY07427	Canola	mitochondrion	48.1	55.04
KRH31482	Soybean	mitochondrion	47.38	54.97
VIT_01s0010g03630.t01	Wine grape	nucleus	50.24	54.81
CDY51342	Canola	nucleus	44.76	54.65
CDY28891	Canola	mitochondrion, plastid	47.86	54.47
KRH63766	Soybean	cytosol, nucleus, plastid	44.52	54.36
Bra004220.1-P	Field mustard	nucleus	47.86	54.03
CDY70354	Canola	cytosol	47.86	54.03
GSMUA_Achr11P...	Banana	nucleus	45.48	53.8
CDY01803	Canola	mitochondrion, plastid	47.86	53.74
KRH54183	Soybean	cytosol, nucleus, plastid	44.05	53.16
Bra034004.1-P	Field mustard	nucleus, plastid	47.38	52.79
AT1G67340.1	Thale cress	mitochondrion, plastid	46.9	51.98
KRH42672	Soybean	mitochondrion	47.86	51.41
KRH58771	Soybean	mitochondrion	48.1	51.27
GSMUA_Achr8P00700_001	Banana	plastid	48.1	46.22
Os05t0388151-00	Rice	nucleus	15.95	35.64

Protein Annotations

EnsemblPlants:TraesCS2D01G281100.1	EnsemblPlantsGene:TraesCS2D01G281100	Gene3D:1.25.40.10	Gene3D:3.30.60.180	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002893	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	InterPro:Znf_MYND	PANTHER:PTHR12298
PANTHER:PTHR12298:SF29	PFAM:PF01753	PFscan:PS50865	SEG:seg	SUPFAM:SSF144232	SUPFAM:SSF81901
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:353350233..353351975

Molecular Weight (calculated)

44647.4 Da

IEP (calculated)

8.952

GRAVY (calculated)

-0.120

Length

420 amino acids

Sequence
(BLAST)

001: MKTRRGACYS CHEPAAEAPE MHRRKRRRTA MEAAGCAGAA VGDLFEDLPD DLLVSILADV AASARSPADL AGAIMTYVPA YSAFLYDECK SSLGWRRRSY
101: GELLGCARRC KRFRELGQNK VVLAKVSPRC LAVRAKSWSD SAHRFLQRCA DAGNLDACYL LGMIRFYCLG SRGSGAALMA AAAVGGHREA LYSLAVIQFN
201: GSGGSKDDRD LRAGAALCAR AASLGHVDAL RELGHCLQDG YGVRRSLLDG RRLLIQANAR ELAAAVTTSA SLLRATAGSV KATRRQHSCL LSDFGCRAAA
301: AAAGEAHAAN RFLVEWFASR PLGAESSPAP APAPAEEGGG LRLCSHALCG RPETRRHEFR RCSVCGVVNY CSRACQALHW KMAHKAECTP MDRWLDGANA
401: NPNPNAVAGV GDAAVAAPAL

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.