CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42672	Soybean	mitochondrion	88.58	89.26
KRG97416	Soybean	nucleus	65.74	74.43
KRH31482	Soybean	mitochondrion	67.77	73.76
VIT_01s0010g03630.t01	Wine grape	nucleus	67.26	68.83
GSMUA_Achr8P17530_001	Banana	mitochondrion	57.11	63.03
KRH63766	Soybean	cytosol, nucleus, plastid	54.82	62.79
GSMUA_Achr9P29380_001	Banana	mitochondrion	51.78	61.82
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	55.08	61.65
KRH54183	Soybean	cytosol, nucleus, plastid	53.81	60.92
GSMUA_Achr9P01480_001	Banana	nucleus	53.05	60.4
GSMUA_Achr5P25110_001	Banana	nucleus	51.78	55.14
HORVU2Hr1G069440.2	Barley	nucleus	51.27	52.74
TraesCS2B01G299700.1	Wheat	nucleus	51.27	52.47
GSMUA_Achr11P...	Banana	nucleus	47.21	52.39
Zm00001d025218_P001	Maize	nucleus	49.49	52.28
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	51.02	51.8
Zm00001d042328_P001	Maize	nucleus	51.27	51.79
TraesCS3B01G467900.1	Wheat	nucleus	50.25	51.7
Zm00001d012016_P001	Maize	nucleus	50.0	51.57
KXG34006	Sorghum	nucleus	50.51	50.51
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	47.97	50.4
Os04t0385600-01	Rice	nucleus	50.25	50.13
TraesCS3D01G425300.1	Wheat	nucleus	48.73	50.0
TraesCS3A01G429900.1	Wheat	nucleus	48.48	49.87
GSMUA_Achr9P07210_001	Banana	nucleus	38.07	49.18
Zm00001d003993_P001	Maize	mitochondrion, nucleus	49.49	49.12
OQU81347	Sorghum	mitochondrion, nucleus	50.76	48.66
TraesCS2A01G282300.1	Wheat	nucleus	51.27	48.1
TraesCS2D01G281100.1	Wheat	nucleus	51.27	48.1
Zm00001d049186_P001	Maize	mitochondrion	39.34	47.26
HORVU3Hr1G094600.2	Barley	plastid	49.49	47.22
EES09728	Sorghum	cytosol, nucleus, plastid	39.85	46.87
GSMUA_Achr8P00700_001	Banana	plastid	50.51	45.54
Os11t0488900-00	Rice	mitochondrion	41.12	45.25
HORVU2Hr1G081910.1	Barley	mitochondrion	21.83	43.0
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	24.87	42.98
HORVU4Hr1G080860.1	Barley	mitochondrion	22.08	42.86
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	40.36	41.95
Zm00001d016505_P001	Maize	mitochondrion	32.99	34.48
KXG30224	Sorghum	mitochondrion	25.38	32.47
Os05t0388151-00	Rice	nucleus	13.96	29.26

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100798174	Gene3D:3.30.60.180	MapMan:35.1	UniProt:A0A0R0K284	EMBL:ACUP02003289
InterPro:F-box-like_dom_sf	EnsemblPlantsGene:GLYMA_05G147400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002893
InterPro:IPR011990	EnsemblPlants:KRH58771	ProteinID:KRH58771	ProteinID:KRH58771.1	PFAM:PF01753	PFscan:PS50865
PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	SUPFAM:SSF144232	SUPFAM:SSF81383	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001B637C4	InterPro:Znf_MYND	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:34139504..34141533

Molecular Weight (calculated)

43352.0 Da

IEP (calculated)

8.817

GRAVY (calculated)

-0.290

Length

394 amino acids

Sequence
(BLAST)

001: MRTRRGACYS GVVSRMCSDA RVSKKKNKDL HMHMHMHMHV PAGDSIIYSR KRQKKTPEKT AGADYEFFES LPDDLVISIF CKLSSTATKP SDFVNILITC
101: KRLNRLALHS LVLSKASPKT FTIKARDWCD SAHKFLKHCA DAGNVEACYT LGMIRFYCLQ NRGSGASFMA KAAINSHARA LYALAVIQFN GSGGTKSDKD
201: LRAGVALCAR AAFLGHVDAM RELGHCLQDG YGVRQNIAEG RRFLVQANAR ELAAVLSTGA AARTWLSWNL QPQQLRQGSG CPLLSDFGCN VPAPEVHPAS
301: LFMAEWFAAR GGSPGPGLRL CSHAGCGRPE TRKHEFRRCS VCGVVNYCSR ACQALDWKFR HKAECSPVQR WLEEDGEDVG NDDGDGEVEV MVDS

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.