Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025218_P001 | Maize | nucleus | 74.94 | 82.57 |
| Zm00001d003993_P001 | Maize | mitochondrion, nucleus | 76.89 | 79.6 |
| Os04t0385600-01 | Rice | nucleus | 75.18 | 78.23 |
| HORVU2Hr1G069440.2 | Barley | nucleus | 72.51 | 77.81 |
| TraesCS2B01G299700.1 | Wheat | nucleus | 72.75 | 77.66 |
| TraesCS2A01G282300.1 | Wheat | nucleus | 72.99 | 71.43 |
| TraesCS2D01G281100.1 | Wheat | nucleus | 72.99 | 71.43 |
| CDX91552 | Canola | cytosol, nucleus, plastid | 37.96 | 55.71 |
| GSMUA_Achr5P25110_001 | Banana | nucleus | 50.12 | 55.68 |
| KXG34006 | Sorghum | nucleus | 53.28 | 55.58 |
| CDY16365 | Canola | cytosol, nucleus, plastid | 41.61 | 55.52 |
| KRG97416 | Soybean | nucleus | 46.96 | 55.46 |
| CDY70354 | Canola | cytosol | 49.63 | 54.84 |
| Bra004220.1-P | Field mustard | nucleus | 49.63 | 54.84 |
| VIT_01s0010g03630.t01 | Wine grape | nucleus | 51.34 | 54.81 |
| KRH31482 | Soybean | mitochondrion | 48.18 | 54.7 |
| CDY01803 | Canola | mitochondrion, plastid | 49.63 | 54.55 |
| CDY12640 | Canola | nucleus, plastid | 45.74 | 54.49 |
| GSMUA_Achr11P... | Banana | nucleus | 46.96 | 54.37 |
| Bra022516.1-P | Field mustard | cytosol | 43.8 | 54.22 |
| CDY07427 | Canola | mitochondrion | 47.93 | 53.68 |
| Solyc05g015420.2.1 | Tomato | mitochondrion | 50.37 | 53.63 |
| AT5G50450.1 | Thale cress | cytosol, nucleus, plastid | 43.8 | 53.57 |
| CDY51342 | Canola | nucleus | 44.77 | 53.49 |
| PGSC0003DMT400074839 | Potato | nucleus | 48.66 | 53.33 |
| AT1G67340.1 | Thale cress | mitochondrion, plastid | 49.15 | 53.3 |
| Bra004092.1-P | Field mustard | mitochondrion | 47.45 | 53.13 |
| CDY28891 | Canola | mitochondrion, plastid | 47.69 | 53.12 |
| KRH54183 | Soybean | cytosol, nucleus, plastid | 43.8 | 51.72 |
| Bra034004.1-P | Field mustard | nucleus, plastid | 47.2 | 51.46 |
| KRH63766 | Soybean | cytosol, nucleus, plastid | 43.07 | 51.45 |
| EES09728 | Sorghum | cytosol, nucleus, plastid | 41.61 | 51.04 |
| KRH42672 | Soybean | mitochondrion | 48.42 | 50.9 |
| KRH58771 | Soybean | mitochondrion | 48.66 | 50.76 |
| GSMUA_Achr8P00700_001 | Banana | plastid | 49.15 | 46.22 |
| Os05t0388151-00 | Rice | nucleus | 16.79 | 36.7 |
| KXG30224 | Sorghum | mitochondrion | 25.55 | 34.09 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.30.60.180 | MapMan:35.1 | EntrezGene:8082748 | UniProt:A0A1Z5RCB1 | InterPro:F-box-like_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002893 | InterPro:IPR011990 | EnsemblPlants:OQU81347 |
| ProteinID:OQU81347 | ProteinID:OQU81347.1 | PFAM:PF01753 | PFscan:PS50865 | PANTHER:PTHR12298 | PANTHER:PTHR12298:SF29 |
| EnsemblPlantsGene:SORBI_3006G045500 | SUPFAM:SSF144232 | SUPFAM:SSF81383 | SUPFAM:SSF81901 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001A871C5 |
| RefSeq:XP_002447657.1 | InterPro:Znf_MYND | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:32048845..32050557
Molecular Weight (calculated)
42431.4 Da
IEP (calculated)
8.715
GRAVY (calculated)
-0.128
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTRRGAGYS CHAAGDGQEA VHRRKRRRTA AECSPAAAAG APGVRLAARD MFEELPDDLV VSILRDVAAS AGSPADLAGA MLTCKRFREL GQTKVVLARA
101: SPRCLAVRAK AWSDDAHRFL QRCADAGNLE ACYLLGMIRF YCLGGSRGSG AALMAAAAVG GHREALYSLA VIQFNGSGGG KDDRDLRAGA ALCARAASLG
201: HVDALRELGH CLQDGYGVRR SVLDGRRLLI QANARELAAA VTASPPVAAA GVGSGKTTSA APRRHSCLLS DFGCRAAGGE AHAANRFLVD WFASRPLGAP
301: AAAAPSGNGN PAAASPEDEE EEAGGALRLC SQALCGRPET RRHEFRRCSV CGVVNYCSRA CQALHWKMAH KAECTPADRW LDVAVGGGVG GGAAVQPNAN
401: ANADAAAAPA P
101: SPRCLAVRAK AWSDDAHRFL QRCADAGNLE ACYLLGMIRF YCLGGSRGSG AALMAAAAVG GHREALYSLA VIQFNGSGGG KDDRDLRAGA ALCARAASLG
201: HVDALRELGH CLQDGYGVRR SVLDGRRLLI QANARELAAA VTASPPVAAA GVGSGKTTSA APRRHSCLLS DFGCRAAGGE AHAANRFLVD WFASRPLGAP
301: AAAAPSGNGN PAAASPEDEE EEAGGALRLC SQALCGRPET RRHEFRRCSV CGVVNYCSRA CQALHWKMAH KAECTPADRW LDVAVGGGVG GGAAVQPNAN
401: ANADAAAAPA P
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
Arabidopsis Description
F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.