Factsheet for Bra004092.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67340.1	Bra012213.1-P	AT1G20140.1	12169662
AT1G67340.1	Bra012214.1-P	AT1G20140.1	12169662
AT1G67340.1	Bra012216.1-P	AT1G20140.1	12169662
AT1G67340.1	Bra025795.1-P	AT1G20140.1	12169662
AT1G67340.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G67340.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G67340.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G67340.1	Bra014159.1-P	AT3G60010.1	12169662
AT1G67340.1	Bra018756.1-P	AT3G60010.1	12169662
AT1G67340.1	Bra018757.1-P	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07427	Canola	mitochondrion	95.64	95.64
Bra004220.1-P	Field mustard	nucleus	82.02	80.91
Bra034004.1-P	Field mustard	nucleus, plastid	76.84	74.8
AT1G67340.1	Thale cress	mitochondrion, plastid	76.84	74.41
PGSC0003DMT400074839	Potato	nucleus	64.58	63.2
GSMUA_Achr8P17530_001	Banana	mitochondrion	60.22	61.9
VIT_01s0010g03630.t01	Wine grape	nucleus	64.85	61.82
Solyc05g015420.2.1	Tomato	mitochondrion	64.85	61.66
Bra022516.1-P	Field mustard	cytosol	53.95	59.64
GSMUA_Achr9P01480_001	Banana	nucleus	56.13	59.54
GSMUA_Achr9P29380_001	Banana	mitochondrion	53.41	59.39
GSMUA_Achr6P06430_001	Banana	cytosol, mitochondrion, nucleus, plastid	55.86	58.24
GSMUA_Achr5P25110_001	Banana	nucleus	55.04	54.59
TraesCS2B01G299700.1	Wheat	nucleus	55.04	52.47
GSMUA_Achr11P...	Banana	nucleus	50.68	52.39
HORVU2Hr1G069440.2	Barley	nucleus	54.22	51.96
Zm00001d012016_P001	Maize	nucleus	52.86	50.79
Zm00001d025218_P001	Maize	nucleus	51.23	50.4
Os01t0921800-00	Rice	cytosol, mitochondrion, nucleus, plastid	52.86	50.0
TraesCS3A01G429900.1	Wheat	nucleus	52.04	49.87
TraesCS3B01G467900.1	Wheat	nucleus	51.77	49.61
KXG34006	Sorghum	nucleus	53.13	49.49
Zm00001d042328_P001	Maize	nucleus	52.59	49.49
TraesCS3D01G425300.1	Wheat	nucleus	51.77	49.48
Zm00001d003993_P001	Maize	mitochondrion, nucleus	53.41	49.37
Os04t0385600-01	Rice	nucleus	53.13	49.37
TraesCS3B01G468000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.14	49.07
TraesCS2D01G281100.1	Wheat	nucleus	55.04	48.1
OQU81347	Sorghum	mitochondrion, nucleus	53.13	47.45
TraesCS2A01G282300.1	Wheat	nucleus	54.22	47.38
Zm00001d049186_P001	Maize	mitochondrion	41.69	46.65
EES09728	Sorghum	cytosol, nucleus, plastid	42.51	46.57
GSMUA_Achr9P07210_001	Banana	nucleus	38.69	46.56
HORVU3Hr1G094600.2	Barley	plastid	52.04	46.25
Os11t0488900-00	Rice	mitochondrion	44.96	46.09
HORVU4Hr1G080860.1	Barley	mitochondrion	24.52	44.34
HORVU1Hr1G007300.2	Barley	cytosol, mitochondrion, peroxisome	27.52	44.3
GSMUA_Achr8P00700_001	Banana	plastid	52.59	44.16
Os02t0506400-00	Rice	cytosol, mitochondrion, nucleus	44.96	43.54
HORVU2Hr1G081910.1	Barley	mitochondrion	23.71	43.5
Zm00001d016505_P001	Maize	mitochondrion	33.52	32.63
Os05t0388151-00	Rice	nucleus	15.8	30.85
KXG30224	Sorghum	mitochondrion	23.98	28.57

Protein Annotations

EnsemblPlants:Bra004092.1	EnsemblPlants:Bra004092.1-P	EnsemblPlantsGene:Bra004092	Gene3D:1.25.40.10	Gene3D:3.30.60.180	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002893	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	InterPro:Znf_MYND
PANTHER:PTHR12298	PANTHER:PTHR12298:SF37	PFAM:PF01753	PFscan:PS50865	SEG:seg	SUPFAM:SSF144232
SUPFAM:SSF81901	UniParc:UPI000254138C	UniProt:M4CIQ8	MapMan:35.1	:	:

Description

AT1G67340 (E=2e-105) | zinc finger (MYND type) family protein / F-box family protein

Coordinates

chrA07:-:16791206..16792475

Molecular Weight (calculated)

39268.2 Da

IEP (calculated)

8.891

GRAVY (calculated)

-0.093

Length

367 amino acids

Sequence
(BLAST)

001: MLPVTNRVFY SAGVFTPARK RRRCVSSSVS PAPETNTGPG LLDSIPDDLV VSILCKLAST SRCPADFISV LMTCKRLKSL ATCPYVLSRL SRKAIAIKAL
101: NWSESAHRFL KRCADAGSLD ACYTLGMIRF YCLQNRGNGA SLMAKAAINS HAPALYSLAV IQFNGSGGSK NDKDLRAGVA LCARAAFLGH VDALRELGHC
201: LQDGYGVPRN ISEGRRFLVQ ANARELAAVL SSGIEARSWL TLSQPQTHGC PLLSDFGCNV PAPETHPANR FLADWFALRG GDSPGDGLRL CSHGGCGRPE
301: IRKNEFRRGS VCGVVNYCSR ACQALDWKLR HKMACAPADQ GAAGDGEGNV QIEGNVNGDN VPVVPMS

Best Arabidopsis Sequence Match ( AT1G67340.1 )
(BLAST)

001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS

Arabidopsis Description

F-box protein At1g67340 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYF9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.