Factsheet for Bra033628.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014159.1-P
Bra018756.1-P
Bra018757.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39550.1	Bra039504.1-P	AT2G03170.1	14749489
AT4G39550.1	Bra014159.1-P	AT3G60010.1	14749489
AT4G39550.1	Bra018756.1-P	AT3G60010.1	14749489
AT4G39550.1	Bra018757.1-P	AT3G60010.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53173	Canola	nucleus, plastid	81.07	85.44
Bra011854.1-P	Field mustard	plastid	61.64	61.95
AT4G39550.1	Thale cress	nucleus	60.61	60.46
Bra011856.1-P	Field mustard	nucleus	27.88	57.07
Bra001343.1-P	Field mustard	nucleus	35.55	52.26
Bra040994.1-P	Field mustard	cytosol	11.76	51.11
Bra022509.1-P	Field mustard	cytosol	43.99	50.74
Bra036150.1-P	Field mustard	plastid	43.73	46.09
Bra023735.1-P	Field mustard	nucleus	43.22	45.19
Bra032688.1-P	Field mustard	cytosol	40.66	45.04
Bra030332.1-P	Field mustard	cytosol	43.22	43.22
Bra011855.1-P	Field mustard	plastid	27.37	42.97
Bra040886.1-P	Field mustard	cytosol	41.69	41.9
Bra017635.1-P	Field mustard	plasma membrane	39.9	41.6
Bra033852.1-P	Field mustard	cytosol, plasma membrane, plastid	28.64	40.73
Bra018362.1-P	Field mustard	cytosol	38.62	40.05
Bra011300.1-P	Field mustard	cytosol	38.62	39.53
Bra011853.1-P	Field mustard	cytosol	41.18	39.17
Bra011852.1-P	Field mustard	cytosol	35.29	38.66
Bra000083.1-P	Field mustard	extracellular	34.78	38.64
Bra006063.1-P	Field mustard	cytosol	18.16	38.38
Bra029716.1-P	Field mustard	mitochondrion	33.76	37.39
Bra011851.1-P	Field mustard	cytosol, plastid	39.13	36.87
Bra029718.1-P	Field mustard	nucleus	37.34	36.78
Bra017634.1-P	Field mustard	extracellular	18.93	34.91
Bra002939.1-P	Field mustard	cytosol	14.07	28.8

Protein Annotations

EnsemblPlants:Bra033628.1	EnsemblPlants:Bra033628.1-P	EnsemblPlantsGene:Bra033628	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF01344	SEG:seg	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000253F87B	UniProt:M4EXT9	MapMan:35.1	:

Description

AT4G39550 (E=8e-133) | kelch repeat-containing F-box family protein

Coordinates

chrA06:+:25937417..25938592

Molecular Weight (calculated)

44065.1 Da

IEP (calculated)

9.834

GRAVY (calculated)

-0.415

Length

391 amino acids

Sequence
(BLAST)

001: MSSPEEKKKR KRMSTTKKKK PPLVTPNPSL PDDLLLSCFA RVSRLYYPTL SLVSKTFQSL LASPELYKTR SSIGRTESCL YVCLLSHPDP IPRWYTLCRK
101: PDKTLTTNGD TMKLKKKSSG YVLAKIPTSH SGPVHWSGLA TVGSDIYNIG GPINDDKDPS SRVLIMDSRS NRWREGPSML VKRRYPVTSV LDGKIYVAGG
201: CKDCSSSSEW MEVFDPKKQT WELVSSPGTE ICGCNYVSKS AGFDGKVYIF GGGNGLAYQP REGRWERVGW EMDTSWPWYS YAVIDNVLYQ YNGGFKWYDT
301: KVGLWRGLKG VKGLPKFPRY IARLADYGGK MAVLWERVLA STGFKDKMIL CAVIALERRN SEEIWGKVEW HDTVLTVSKS CRVDYALATT V

Best Arabidopsis Sequence Match ( AT4G39550.1 )
(BLAST)

001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV

Arabidopsis Description

F-box/kelch-repeat protein At4g39550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.